Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1387 ATGGCTTTGTGGGATTTCTGCTTGCTGTTTTTCTTCTTGATCTTTGCTTCTATTCCACTTGCTTTTGCTGTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAGTGGCGGCGATCCATGTGCAGAGTCATGGAAAGGAGTGACCTGTGAAGGGTCTGCAGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGGACGATGGGTTATGCGCTCTCAAGTCTTTTGTCATTGAAAAATCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAACTTAAGTGGTAATCTTCCTTATTCATTTTCCACTATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGTTCAGGCGATAGGAGATGTTTTCAACAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAATAACTTTACTGGGGATCTTCCTAATTCCTTGAGCTCATTATCCAATGTTTCATCCCTCTTTTTGCAGAACAACCAATTAACTGGTTCTCTCAATAATCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATTGAAAATTTCATATACAATGGAAATTCATTTGCCGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAACGGCCCCAGACATCCTGGGTCTGGCGGTGGCACACATACTGCCCCAAGTTCTGATAGTGATAGCGGCCCGTCCCACTCGAACAAAGGCTTGTCAGTTTTGGCTATAGTTGGAATTATTTTGGGTGCAATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCCGTATGCATCCAGAAGAGAAAACGGAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCCGTTGCAGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAGGCGAAAAATGGATCAGTGAAAAGAATAAAGTCCCCTATTACCGCTACTTCCTACACCGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGAGTTCCCAAACGGGAAGATAATGGCAATTAAGAAAATCGACAATGCAGCATTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGATTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCGGAGCATGGGCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTATGCTGAAGATAGTAGTAAGACACTGACTTGGAATGCACGTGTTCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCCGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCTCATTTGTCAGATTGCGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAGATGGTTGGTTCCTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCTGGAATATACACTGTCAAAAGCGATGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTTTATCGCGCTTTGCTGACATAATCGCTCTGTGTGTTCAGCCCGAACCTGAATTTCGACCTCCGATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGCGACGAGTCGGGTTTCACTTACAAAACGCCTGACCACGATGCAGTTGAGTTGCCATTTTGA 2142 43.79 MALWDFCLLFFFLIFASIPLAFAVTDASDVQALQVIYTSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLLSLKNLDMSDNNIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSFSTMASLNYLNMSHNLLVQAIGDVFNNLTTLGTLDLSFNNFTGDLPNSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYNGNSFADSPAPPPPPFTPPPPGRSRNGPRHPGSGGGTHTAPSSDSDSGPSHSNKGLSVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHYAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHDAVELPF 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12917447 12922574 + Lag0025432.1 Lac10g1387 583918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1387 713 Gene3D Transferase(Phosphotransferase) domain 1 483 707 - -
Lac10g1387 713 MobiDBLite consensus disorder prediction 273 289 - -
Lac10g1387 713 Pfam Protein kinase domain 408 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1387 713 ProSiteProfiles Protein kinase domain profile. 405 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1387 713 Gene3D Phosphorylase Kinase; domain 1 366 482 - -
Lac10g1387 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 483 693 - -
Lac10g1387 713 MobiDBLite consensus disorder prediction 244 263 - -
Lac10g1387 713 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lac10g1387 713 SUPERFAMILY L domain-like 25 232 - -
Lac10g1387 713 SUPERFAMILY Protein kinase-like (PK-like) 385 679 IPR011009 -
Lac10g1387 713 CDD STKc_IRAK 411 682 - -
Lac10g1387 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 684 IPR046959 -
Lac10g1387 713 MobiDBLite consensus disorder prediction 243 289 - -
Lac10g1387 713 Gene3D Ribonuclease Inhibitor 26 253 IPR032675 -
Lac10g1387 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Lac10g1387 713 Pfam Leucine Rich Repeat 211 231 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 370 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1387 Lac-Chr10:12917447 Lac12g2502 Lac-Chr12:42005360 1.00E-144 dispersed
Lac10g1387 Lac-Chr10:12917447 Lac11g1804 Lac-Chr11:32561847 8.50E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85679 PF00069 Pkinase 3.90E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1387 - - - 0.0