Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1387 ATGGCTTTGTGGGATTTCTGCTTGCTGTTTTTCTTCTTGATCTTTGCTTCTATTCCACTTGCTTTTGCTGTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAGTGGCGGCGATCCATGTGCAGAGTCATGGAAAGGAGTGACCTGTGAAGGGTCTGCAGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGGACGATGGGTTATGCGCTCTCAAGTCTTTTGTCATTGAAAAATCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAACTTAAGTGGTAATCTTCCTTATTCATTTTCCACTATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGTTCAGGCGATAGGAGATGTTTTCAACAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAATAACTTTACTGGGGATCTTCCTAATTCCTTGAGCTCATTATCCAATGTTTCATCCCTCTTTTTGCAGAACAACCAATTAACTGGTTCTCTCAATAATCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATTGAAAATTTCATATACAATGGAAATTCATTTGCCGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAACGGCCCCAGACATCCTGGGTCTGGCGGTGGCACACATACTGCCCCAAGTTCTGATAGTGATAGCGGCCCGTCCCACTCGAACAAAGGCTTGTCAGTTTTGGCTATAGTTGGAATTATTTTGGGTGCAATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCCGTATGCATCCAGAAGAGAAAACGGAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCCGTTGCAGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAGGCGAAAAATGGATCAGTGAAAAGAATAAAGTCCCCTATTACCGCTACTTCCTACACCGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGAGTTCCCAAACGGGAAGATAATGGCAATTAAGAAAATCGACAATGCAGCATTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGATTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCGGAGCATGGGCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTATGCTGAAGATAGTAGTAAGACACTGACTTGGAATGCACGTGTTCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCCGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCTCATTTGTCAGATTGCGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAGATGGTTGGTTCCTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCTGGAATATACACTGTCAAAAGCGATGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTTTATCGCGCTTTGCTGACATAATCGCTCTGTGTGTTCAGCCCGAACCTGAATTTCGACCTCCGATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGCGACGAGTCGGGTTTCACTTACAAAACGCCTGACCACGATGCAGTTGAGTTGCCATTTTGA 2142 43.79 MALWDFCLLFFFLIFASIPLAFAVTDASDVQALQVIYTSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLLSLKNLDMSDNNIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSFSTMASLNYLNMSHNLLVQAIGDVFNNLTTLGTLDLSFNNFTGDLPNSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYNGNSFADSPAPPPPPFTPPPPGRSRNGPRHPGSGGGTHTAPSSDSDSGPSHSNKGLSVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHYAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHDAVELPF 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12917447 12922574 + Lag0025432.1 Lac10g1387 583918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1387 713 Gene3D Transferase(Phosphotransferase) domain 1 483 707 - -
Lac10g1387 713 MobiDBLite consensus disorder prediction 273 289 - -
Lac10g1387 713 Pfam Protein kinase domain 408 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1387 713 ProSiteProfiles Protein kinase domain profile. 405 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1387 713 Gene3D Phosphorylase Kinase; domain 1 366 482 - -
Lac10g1387 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 483 693 - -
Lac10g1387 713 MobiDBLite consensus disorder prediction 244 263 - -
Lac10g1387 713 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lac10g1387 713 SUPERFAMILY L domain-like 25 232 - -
Lac10g1387 713 SUPERFAMILY Protein kinase-like (PK-like) 385 679 IPR011009 -
Lac10g1387 713 CDD STKc_IRAK 411 682 - -
Lac10g1387 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 684 IPR046959 -
Lac10g1387 713 MobiDBLite consensus disorder prediction 243 289 - -
Lac10g1387 713 Gene3D Ribonuclease Inhibitor 26 253 IPR032675 -
Lac10g1387 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Lac10g1387 713 Pfam Leucine Rich Repeat 211 231 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Lac10g1387 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 370 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1387 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1387 Lac-Chr10:12917447 Lac12g2502 Lac-Chr12:42005360 1.00E-144 dispersed
Lac10g1387 Lac-Chr10:12917447 Lac11g1804 Lac-Chr11:32561847 8.50E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac10g1387 . 390 683 Strubbelig Receptor Gene Family AT1G11130 53.7 3.1e-85 313.9
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac12g2502 . 255 973 Strubbelig Receptor Gene Family AT1G53730 55.1 1.2e-201 700.7
Lac4g3072 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.6 2.3e-192 669.8
Lac8g1144 . 5 682 Strubbelig Receptor Gene Family AT1G53730 51.4 4.0e-152 536.2
Lac12g2502 . 265 977 Strubbelig Receptor Gene Family AT3G14350 51.0 1.6e-182 637.1
Lac4g3072 . 10 696 Strubbelig Receptor Gene Family AT3G14350 56.4 9.7e-172 601.3
Lac10g1387 . 338 713 Strubbelig Receptor Gene Family AT4G22130 81.9 2.6e-175 612.8
Lac12g2502 . 661 989 Strubbelig Receptor Gene Family AT4G22130 63.4 1.2e-119 427.9
Lac4g3072 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.8 3.0e-118 423.3
Lac12g0685 . 474 769 Strubbelig Receptor Gene Family AT4G22130 62.0 1.5e-106 384.4
Lac8g1144 . 346 696 Strubbelig Receptor Gene Family AT4G22130 52.5 1.4e-99 361.3
Lac10g2573 . 485 807 Strubbelig Receptor Gene Family AT4G22130 52.6 8.7e-94 342.0
Lac1g3304 . 610 877 Strubbelig Receptor Gene Family AT4G22130 60.0 1.7e-89 327.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85679 PF00069 Pkinase 3.90E-44 CL0016 Lac PK