Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1488 ATGACGAGGAAGAAGGTAAAATTGGCATTCATCACAAACGACGCAGCAAGAAAAGCCACATTCAAGAAAAGAAACAAAGGCTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATGCCCACCCCGACCTCTGGCCCTCCGCCGTCGGCGTCCAGAGGGTTCTCTCTCAGTTCAAAAGCCTGCCGGAGATGGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATTGCCAAGGCCGCCGATCAGCTCAAGAAGCTCGAAAGGGAGAATCGCGAGAAGGAGATCACCGATGTCATGTTTCGGAGCCTCGTTGCGGGGTCGGCGCCGCTGCGGGGTCTCAATGTGATTGATTTGAATGATCTTGGGTGGATGGTTGATCAGAAGGTGGCTGATATTTGCAAGAGGATGGAGTTGCTTTCTGCAGCCGTGGTGGCGGAGGCAAACGACCAACCACCATGTGTGGAGGCGGTCGAGCCGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGGAAGTGATGATCCAATGGGATTCAATATTGGGGATGATGTGATTCAGTTTCCTAATTTTGGGGAGGATGAGAACCATGGCACTTTTTGGTCAAATGATGCCTTTTTCCCTTGA 675 52.44 MTRKKVKLAFITNDAARKATFKKRNKGFLKKLTELTTLCGIDACAIIFSPFNAHPDLWPSAVGVQRVLSQFKSLPEMEQCKKMVNQETFLRHRIAKAADQLKKLERENREKEITDVMFRSLVAGSAPLRGLNVIDLNDLGWMVDQKVADICKRMELLSAAVVAEANDQPPCVEAVEPPSWFMEMVSQGSDDPMGFNIGDDVIQFPNFGEDENHGTFWSNDAFFP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14583819 14584493 + Lag0025533.1 Lac10g1488 584019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1488 224 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Lac10g1488 224 Coils Coil 87 114 - -
Lac10g1488 224 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lac10g1488 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g1488 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 153 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac10g1488 224 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1488 Lac-Chr10:14583819 Lac3g3071 Lac-Chr3:49077950 1.30E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22784 PF00319 SRF-TF 2.70E-15 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1488 - - - 0.0