Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g1488 | ATGACGAGGAAGAAGGTAAAATTGGCATTCATCACAAACGACGCAGCAAGAAAAGCCACATTCAAGAAAAGAAACAAAGGCTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATGCCCACCCCGACCTCTGGCCCTCCGCCGTCGGCGTCCAGAGGGTTCTCTCTCAGTTCAAAAGCCTGCCGGAGATGGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATTGCCAAGGCCGCCGATCAGCTCAAGAAGCTCGAAAGGGAGAATCGCGAGAAGGAGATCACCGATGTCATGTTTCGGAGCCTCGTTGCGGGGTCGGCGCCGCTGCGGGGTCTCAATGTGATTGATTTGAATGATCTTGGGTGGATGGTTGATCAGAAGGTGGCTGATATTTGCAAGAGGATGGAGTTGCTTTCTGCAGCCGTGGTGGCGGAGGCAAACGACCAACCACCATGTGTGGAGGCGGTCGAGCCGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGGAAGTGATGATCCAATGGGATTCAATATTGGGGATGATGTGATTCAGTTTCCTAATTTTGGGGAGGATGAGAACCATGGCACTTTTTGGTCAAATGATGCCTTTTTCCCTTGA | 675 | 52.44 | MTRKKVKLAFITNDAARKATFKKRNKGFLKKLTELTTLCGIDACAIIFSPFNAHPDLWPSAVGVQRVLSQFKSLPEMEQCKKMVNQETFLRHRIAKAADQLKKLERENREKEITDVMFRSLVAGSAPLRGLNVIDLNDLGWMVDQKVADICKRMELLSAAVVAEANDQPPCVEAVEPPSWFMEMVSQGSDDPMGFNIGDDVIQFPNFGEDENHGTFWSNDAFFP | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14583819 | 14584493 | + | Lag0025533.1 | Lac10g1488 | 584019 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g1488 | 224 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Lac10g1488 | 224 | Coils | Coil | 87 | 114 | - | - | |
Lac10g1488 | 224 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Lac10g1488 | 224 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g1488 | 224 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 153 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac10g1488 | 224 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1488 | Lac-Chr10:14583819 | Lac3g3071 | Lac-Chr3:49077950 | 1.30E-64 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22784 | PF00319 | SRF-TF | 2.70E-15 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g1488 | - | - | - | 0.0 |