Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1567 ATGGACTCTGGTGATGTTAAGCAATCCTTGCTTCATAAGCTGTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTACCCGTCATGGTAGTTTTTCACGTTCAGTAGAAAATAATAATCAACCACAAACTGTTGATGAACTGTCTCATCAATCTATGATTGTTACACAAGTTAGTTTTAGGCAAGTATTTGTTCTGCTGGCTACGTATTTGGGAGGAGGCACACTTTGTTTCTTCCTTGTTCGGGATCAGATCAGTGGAAAGAAAACAAACGGGATTGTTGATGCCCTTTACTTTTGTGTTGTGACAATGACCACGGTTGGATATGGAGATCTTGTTCCTAGTAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAACTCCTTCTGGTAAAAGCCATGTTCATGACGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCGGAGGCTCACAAACGCAAATACAAATTCATCATGACTGGAATCCTCCTTTGGGTTCTCATCGTTGTTGGAACTCTTTTCTTGATTGTGGTTGAGAAGCTAGACATCACTGATGCATTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGATGAGAGCTTCTCTACAACGGCCGGTCGTGTTTTTGCTGCCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCAGAATTACACACAGAAAGGAGGCAGAAATCACTCGTGAATTGGGTTCTCTCCCGAAACCTCACATACTCAGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGTTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGACATTGCACCAATACTCGACACCTTTAAGAAGCTGGATATTGATCAATCAGGATCTCTAACAGAAGCTGATTTAATAACTCCATGGTTGTCGGCTTAA 1038 41.23 MDSGDVKQSLLHKLSDSDKRKSLQRRKSTRHGSFSRSVENNNQPQTVDELSHQSMIVTQVSFRQVFVLLATYLGGGTLCFFLVRDQISGKKTNGIVDALYFCVVTMTTVGYGDLVPSSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQELLLVKAMFMTKKISSSEILQESEAHKRKYKFIMTGILLWVLIVVGTLFLIVVEKLDITDAFYCVCSTITTLGYGDESFSTTAGRVFAAIWIMSSTICLAQFFLYLAELHTERRQKSLVNWVLSRNLTYSDLEEADLDHDKVVSVAEFVIYKLKEMGKINQEDIAPILDTFKKLDIDQSGSLTEADLITPWLSA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16300081 16301236 - Lag0025612.1 Lac10g1567 584098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1567 345 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Lac10g1567 345 Gene3D - 57 153 - -
Lac10g1567 345 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac10g1567 345 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac10g1567 345 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 61 310 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Lac10g1567 345 SUPERFAMILY Voltage-gated potassium channels 178 278 - -
Lac10g1567 345 Pfam Ion channel 68 148 IPR013099 -
Lac10g1567 345 Pfam Ion channel 189 260 IPR013099 -
Lac10g1567 345 SUPERFAMILY Voltage-gated potassium channels 52 149 - -
Lac10g1567 345 Gene3D - 276 340 - -
Lac10g1567 345 FunFam Calcium-activated outward-rectifying potassium channel 1 59 154 - -
Lac10g1567 345 SUPERFAMILY EF-hand 275 339 IPR011992 -
Lac10g1567 345 MobiDBLite consensus disorder prediction 1 45 - -
Lac10g1567 345 Gene3D - 160 272 - -
Lac10g1567 345 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1567 Lac-Chr10:16300081 Lac2g1502 Lac-Chr2:12995117 1.60E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1567 K05389 - csv:101214791 577.015