Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1598 ATGGCCTCAAAGACGAATTCGAAACCTTCTGCAAAGCAAACGAAGGGGATAACCGGCGTTAAAGCAACCGATGCAAGTGATCTGAAGTCCTTACCTTCACAGACTTCGTTGGGAAACAAAATTGGTTCAGTTATTTCTGGAGATGTATCAAACTCCACACAGAGATCTTTGAATCAGTCTACTTTGATTGATTCATCAAATACCAAATCCTCAAGTTTAAATCCTAAAGAGTCCACTGAGTCCTGTAATCAGAAAGTCAAAGAAAATTCCTTGAAGCCTGGCTCTAAGACATTGACAGAGGGAGATCCTGCTCTTAGCGGCACTCGGGGCTTAGCGGAGGACTCTATAGATCAAGAGAAGAAAATATCAGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTCTTGCCAAGACCAGCGGAAGTGCTAAAATCAGCGATCGTGTCGAGATGGTTGAGAGTGGCAAGAGCAGTATGTGCCGAGGAAGCACAAGCAGCGACATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTACTTCGCGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACCCATTTTGAGACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCCGGCGGAGACTTGCACACTCTAAGACAGAGACAGCCAGGGAAGCATTTTCCCGAACAGGCGGTGAAATTTTATGTAGCAGAGGTGCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTATACAGAGACCTTAAGCCTGAGAATGTTCTCGTGAGGGAAGATGGCCACATAATGCTTTCGGACTTTGATCTTTCCCTAAGATGTGCTGTTAGTCCAACGTTGGTGAAGGGCTCGTGTTCTGAGTCTGAACCCTTAAGAAAGAATCCAGTTTACTGTGTCCAGCCGGCTTGTATCGAACCTTCCTGTATCCAGCCATCCTGTGTAGTTCCCACGACGTGCTTCTCTCCCCGAATTTTCTCTAGCAAGTCAAAGAAAGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCATCGCAGAGCCTACAGAGGCGAGGTCGATGTCATTTGTTGGTACACATGAGTACTTGGCACCAGAGATCATTAAAGGCGAAGGTCACGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACCCCGTTTAAGGGATCTGGAAATCGAGCCACACTGTTCAATGTCGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGAGATCTCATCAGAGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCATACAAAAGAGGGGCAACTGAGATCAAGCAACACCCATTCTTTGAAGGTGTTAACTGGGCATTGATACGATGTGCTTCGCCACCAGAAGTACCGAAGCCTGTTGAGATTGAGAGGATACCATCGCCAGCACCTCCAGTCAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCTGATTCCAAATCGTCTGATAATTATCTTGAGTTTGATTTCTTTTAG 1713 45.71 MASKTNSKPSAKQTKGITGVKATDASDLKSLPSQTSLGNKIGSVISGDVSNSTQRSLNQSTLIDSSNTKSSSLNPKESTESCNQKVKENSLKPGSKTLTEGDPALSGTRGLAEDSIDQEKKISECGSGKDSSVSAKVSDGTNSLAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNPVYCVQPACIEPSCIQPSCVVPTTCFSPRIFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMARPGPDSKSSDNYLEFDFF 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16863774 16866110 - Lag0025643.1 Lac10g1598 584129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1598 570 MobiDBLite consensus disorder prediction 537 562 - -
Lac10g1598 570 MobiDBLite consensus disorder prediction 127 150 - -
Lac10g1598 570 Gene3D Transferase(Phosphotransferase) domain 1 407 531 - -
Lac10g1598 570 FunFam Serine/threonine-protein kinase AGC1-7 406 531 - -
Lac10g1598 570 Pfam Protein kinase domain 410 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1598 570 Pfam Protein kinase domain 216 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1598 570 SUPERFAMILY Protein kinase-like (PK-like) 207 552 IPR011009 -
Lac10g1598 570 CDD STKc_phototropin_like 206 536 - -
Lac10g1598 570 ProSiteProfiles Protein kinase domain profile. 154 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1598 570 SMART serkin_6 154 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1598 570 FunFam serine/threonine-protein kinase D6PK-like 260 327 - -
Lac10g1598 570 Gene3D Transferase(Phosphotransferase) domain 1 260 328 - -
Lac10g1598 570 MobiDBLite consensus disorder prediction 27 96 - -
Lac10g1598 570 MobiDBLite consensus disorder prediction 1 20 - -
Lac10g1598 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g1598 570 Gene3D Phosphorylase Kinase; domain 1 206 259 - -
Lac10g1598 570 MobiDBLite consensus disorder prediction 1 175 - -
Lac10g1598 570 PANTHER FLIPPASE KINASE 1-RELATED 206 533 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1598 Lac-Chr10:16863774 Lac8g0213 Lac-Chr8:2395477 5.40E-168 dispersed
Lac1g3129 Lac-Chr1:51633641 Lac10g1598 Lac-Chr10:16863774 5.90E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85680 PF00069 Pkinase 2.10E-20 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1598 K08286 - csv:101213662 1012.68