Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1679 ATGACGAGAGCTTTTAGAAGACGAACTTTGTATTCAAGGCCCATAGATCGCCTCCGTTTCCGAGCATCGGCGGACGCTGCTTCAAAATCTGGATTCATCAGAGAGATGAAGCTGAAGGAGATCTTGACTTCTTTACTAATAGGTTTTCCGTTGGTCGTTTTTGTTGTTTTGGTGCTTAGGAATCCGGCGGTGGATCTCTCTATGGGTTTTGCCGAAGCCAGAGCATTGGAAAGAGTTGCCAGTAATGGCAGTTCTGAGAGTTCAGGTTCAGAAAACGGTTTCTCTCAACTTTCCAATAGAGACAAACTTATTGGAGGCCTTCTCATTCCTGGATTTGATGAAGGATCATGCTTGAGCAGATATCAATCCAGTTTATATAGAAGAACTTCAACCCAAAAACCTTCGTCTTACCTCCTCTCAAAACTTAGAGAATACGAAGCTCTTCATCGACGCTGTGGGCCCCATACGAAACCTTATGATGAAGCAGTAAAGCAACTCAGATCTGGCAGTAGTGGTAGTTTGACAGAGTGTAAATATGTTGTGTGGATATCTTATAGTGGCTTGGGAAACAAAATGCTCACTTTGGCTTCTGCATTCCTCTATGCCCTCCTTACCAACCGTGTCTTGCTTGTTGACCCAGGGAAGGATATGGCTGACCTATTTTGTGAACCATTCCCAGAAAAATCTTGGTTGCTTCCAAATGACTTCCCCTTGATGGATCAATTTGGCAACTTTGATCCGAAATCTCCTAATTGTCATGGAAATATGCTGAAGACAAACACTCTAAACACATCGATAGAGTCGCTCCCATCGTATCTATATCTACATTTGGTTCATGACTATGATGATCATGATAAACTTTTCTTTTGTGATCAAGAACAGGCTCTTTTAGGTAGAGTCCCTTGGCTAATACTCAAGACAGATAACTACTTTGTTCCATCTCTTTTCCTGATCCCGTCTTTTGAGCACGAACTGAGTAACTTATTTCCCCAAAAAGACACCGTGTTCCATCATCTGGGTCGGTATCTTTTCCATCCTTCAAATCATGTTTGGGGATTAATTACGAGATACTATGAAGCATACCTATCAAGGGCAGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTCGAACATATAATGAATCAGATTTTAGGCTGTACTCTGAAGGAGAAGCTACTGCCTGAGGTAGACAAGGAAGGCTTCTCTTCCATTCCTTTGGAACGCCCAAGAGTGAAAGTTGTTTTGATGACATCTTTAAGTTCTGGATATTATGAAAAAATAAGAACCTTGTACTGGGAAAACCCGACCACAACCGGAGAGGTCGTTGCAGTTTACCAGCCGAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAACAGGAAAGCATGGGCAGAAATGTATCTTCTGAGTTTGAGTGATGTATTGGTGACCAGTGCATGGTCAACGTTCGGCTATGTGGCTCAAGGACTCGGCGGATCGAAGCCGTGGATTCTTTACAAGGCGGAGAACATGACTACGCCTGATCCACCGTGTCGTCGAGCAATGTCAATAGAGCCTTGCTTTCATGCTCCTCCATTCTATGACTGCAAGGCAAAGAAAGGAATAGATACTGGTGAAATTGTTCCCCATGTAAGACATTGTGAAGACATGAGCTGGGGATTAAGCTTGTTCACCATGAGGTATAATAATGAAATTTGTCCATAG 1731 42.98 MTRAFRRRTLYSRPIDRLRFRASADAASKSGFIREMKLKEILTSLLIGFPLVVFVVLVLRNPAVDLSMGFAEARALERVASNGSSESSGSENGFSQLSNRDKLIGGLLIPGFDEGSCLSRYQSSLYRRTSTQKPSSYLLSKLREYEALHRRCGPHTKPYDEAVKQLRSGSSGSLTECKYVVWISYSGLGNKMLTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLMDQFGNFDPKSPNCHGNMLKTNTLNTSIESLPSYLYLHLVHDYDDHDKLFFCDQEQALLGRVPWLILKTDNYFVPSLFLIPSFEHELSNLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLSRADERIGIQVRVFESEPGPFEHIMNQILGCTLKEKLLPEVDKEGFSSIPLERPRVKVVLMTSLSSGYYEKIRTLYWENPTTTGEVVAVYQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPDPPCRRAMSIEPCFHAPPFYDCKAKKGIDTGEIVPHVRHCEDMSWGLSLFTMRYNNEICP 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18535328 18537924 + Lag0025724.1 Lac10g1679 584210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1679 576 FunFam Galactoside 2-alpha-L-fucosyltransferase 175 226 - -
Lac10g1679 576 Gene3D - 174 224 - -
Lac10g1679 576 PANTHER FUCOSYLTRANSFERASE 2-RELATED 41 567 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Lac10g1679 576 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1679 K13681 - - csv:101216541 1034.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0093 Lac-Chr10:728333 Lac10g1679 Lac-Chr10:18535328 2.40E-195 dispersed
Lac10g1679 Lac-Chr10:18535328 Lac5g2338 Lac-Chr5:42048607 2.50E-157 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g1679 . 100 566 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 5.3e-157 552.0
Lac10g0093 . 116 585 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 4.3e-151 532.3
Lac10g1679 . 81 565 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.1e-164 577.4
Lac10g0093 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.4 1.7e-160 563.5
Lac10g1679 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14110 54.1 6.3e-138 488.4
Lac10g0093 . 102 583 Xyloglucan Fucosyltransferase1 AT1G14110 50.5 2.0e-131 466.8
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 2.7e-187 652.5
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT1G49710 73.7 9.2e-143 504.6
Lac8g2244 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 5.5e-167 584.7
Lac10g0093 . 44 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-135 479.9
Lac10g1679 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.2e-129 460.3
Lac10g1679 . 6 565 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 4.5e-183 638.6
Lac10g0093 . 118 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.4 2.7e-167 586.3
Lac10g1679 . 36 565 Xyloglucan Fucosyltransferase1 AT2G03220 63.9 1.8e-200 696.4
Lac10g0093 . 60 582 Xyloglucan Fucosyltransferase1 AT2G03220 60.3 1.2e-185 647.1
Lac5g2338 . 80 567 Xyloglucan Fucosyltransferase1 AT2G03220 52.7 9.4e-149 524.6
Lac5g2337 . 86 573 Xyloglucan Fucosyltransferase1 AT2G03220 52.3 3.9e-147 519.2
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 54.8 2.3e-154 543.1
Lac10g0093 . 96 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 2.6e-145 513.1
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15370 54.0 3.4e-148 522.7
Lac10g0093 . 107 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 1.7e-139 493.8
Lac10g1679 . 92 566 Xyloglucan Fucosyltransferase1 AT2G15390 54.4 7.8e-153 538.1
Lac10g0093 . 112 585 Xyloglucan Fucosyltransferase1 AT2G15390 51.4 2.8e-142 503.1
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT3G19280 63.4 5.2e-183 638.3
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT3G19280 75.8 1.3e-146 517.3
Lac10g0093 . 44 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-135 479.9
Lac10g1679 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.2e-129 460.3
Lac10g1679 . 6 565 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 4.5e-183 638.6
Lac10g0093 . 118 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.4 2.7e-167 586.3
Lac10g1679 . 36 565 Xyloglucan Fucosyltransferase1 AT2G03220 63.9 1.8e-200 696.4
Lac10g0093 . 60 582 Xyloglucan Fucosyltransferase1 AT2G03220 60.3 1.2e-185 647.1
Lac5g2338 . 80 567 Xyloglucan Fucosyltransferase1 AT2G03220 52.7 9.4e-149 524.6
Lac5g2337 . 86 573 Xyloglucan Fucosyltransferase1 AT2G03220 52.3 3.9e-147 519.2
Lac10g1679 . 6 565 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 4.5e-183 638.6
Lac10g0093 . 118 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.4 2.7e-167 586.3
Lac10g0093 . 44 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-135 479.9
Lac10g1679 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.2e-129 460.3
Lac10g1679 . 92 566 Xyloglucan Fucosyltransferase1 AT2G15390 54.4 7.8e-153 538.1
Lac10g0093 . 112 585 Xyloglucan Fucosyltransferase1 AT2G15390 51.4 2.8e-142 503.1
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15370 54.0 3.4e-148 522.7
Lac10g0093 . 107 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 1.7e-139 493.8
Lac10g1679 . 100 566 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 5.3e-157 552.0
Lac10g0093 . 116 585 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 4.3e-151 532.3
Lac10g1679 . 81 565 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.1e-164 577.4
Lac10g0093 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.4 1.7e-160 563.5
Lac10g1679 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14110 54.1 6.3e-138 488.4
Lac10g0093 . 102 583 Xyloglucan Fucosyltransferase1 AT1G14110 50.5 2.0e-131 466.8
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 54.8 2.3e-154 543.1
Lac10g0093 . 96 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 2.6e-145 513.1
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT3G19280 63.4 5.2e-183 638.3
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT3G19280 75.8 1.3e-146 517.3
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 2.7e-187 652.5
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT1G49710 73.7 9.2e-143 504.6
Lac8g2244 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 5.5e-167 584.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33