Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1836 ATGGCCAATCCCCCACTCCACCACACCGCCTTATCCAACTCTTCATCTTTTTCTAATTTCCATGCAAACTCCTCTGCACCTTTCATGAATCAACAAGGATCACCTTTTGATTTTGGAGAGCTTGAAGAAGCCATAGTTTTGCAGGGGGTCAACCTTGGAAATCATGAATCCAAATCGCCACATTTTCTCACAGGAAGGCCTGCTGCTACTCTTGAAATCTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGTGGTTCAAATTCAAAGTCAGGAGGAGACAGCACAGATGATTCAGGATCAGCAAATATAAACAACAACACTCTCACAAGCAAAACTGAATTGGAATTGGAATTGGAACCTGAATCACCAATCAGCGCAAGGCCTTGTTCTTCAACTCCTCAAGGATTTGACCAAATTCATCATCTTCAAATTCAACATCTTCAAACAGACATGGAAGATGATGCCTTGACAACACAACCAAATCAATCCTCTGCCAAACAAAAGAGAAAAGGAGCTGGTTCAACATCAGAGAGGCAGCTCGATCCCAAGACACTGAGACGATTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCCAGTAGAATCAAGCTCTCTCAGCTCGAACAAGACCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGAGCTTGTGGTGGCGTTATGGGTGGCAATATCAGTTCCGGAGCTGCAATATTTGATATGGAGTATGCGCGGTGGCTCGACGACGACCACCGTCTGATGGCGGAGCTGCGGACGGCGCTGCACGGGCATCTCCCGGACGGCGATCTCCGAGCAATAGTAGACAGTTACATCTCCCACTACGACGAAATATTTCACCTGAAAGGCGTGGCGGCGAAATCCGACGTCTTTCATCTGATCACCGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCCAAGCTGATAGAGATGCTAATTCCGCAATTAGACACATTGACAGAGCAACAAGCAGTGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTGTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATAATCACCATCGCCGGCACCACCGTCGTCGACGGCATCAACCATATGGCCGTCGCCGCCGGCAAGCTCTCCAATCTTGAGGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAATTGCGTCGATTATTGACAGTCCGACAAGCTGCACGATGTTTTGTAGTGATTGGAGAGTACTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCAAGAGAGAGCTGCTTGAACGATGAAAATTCATGTCAAACAGCAACAGAGCTACAGATGATTCAAAGTTCCCACACCCATTTCCCAAACTTTTGA 1479 47.67 MANPPLHHTALSNSSSFSNFHANSSAPFMNQQGSPFDFGELEEAIVLQGVNLGNHESKSPHFLTGRPAATLEIFPSWPIRFQQTPTLGGGSNSKSGGDSTDDSGSANINNNTLTSKTELELELEPESPISARPCSSTPQGFDQIHHLQIQHLQTDMEDDALTTQPNQSSAKQKRKGAGSTSERQLDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDDDHRLMAELRTALHGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAVGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTTVVDGINHMAVAAGKLSNLEGFIRQADMLRQQTLHQLRRLLTVRQAARCFVVIGEYYGRLRALSSLWVSRPRESCLNDENSCQTATELQMIQSSHTHFPNF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22868341 22873464 + Lag0025881.1 Lac10g1836 584367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1836 492 ProSiteProfiles DOG1 domain profile. 253 461 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac10g1836 492 MobiDBLite consensus disorder prediction 82 140 - -
Lac10g1836 492 MobiDBLite consensus disorder prediction 161 175 - -
Lac10g1836 492 Gene3D - 187 236 - -
Lac10g1836 492 PANTHER TRANSCRIPTION FACTOR TGA9 154 465 - -
Lac10g1836 492 MobiDBLite consensus disorder prediction 82 118 - -
Lac10g1836 492 FunFam BZIP family transcription factor 187 236 - -
Lac10g1836 492 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 191 206 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g1836 492 SUPERFAMILY Leucine zipper domain 188 229 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g1836 492 Pfam Seed dormancy control 271 345 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac10g1836 492 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g1836 492 MobiDBLite consensus disorder prediction 176 191 - -
Lac10g1836 492 CDD bZIP_HBP1b-like 188 239 - -
Lac10g1836 492 Pfam bZIP transcription factor 188 228 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g1836 492 MobiDBLite consensus disorder prediction 161 191 - -
Lac10g1836 492 SMART brlzneu 184 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g1836 492 Coils Coil 207 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1836 Lac-Chr10:22868341 Lac9g2703 Lac-Chr9:45307956 2.60E-142 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22790 PF14144 DOG1 2.10E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1836 K14431 - csv:101204604 760.37