Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1892 ATGGCAGAAGAAAACATCTTCTGCCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACGACCCTTCTTCCTCCTCCTCTCCCTCCATTTCTCTCTCTTCTTCGTCTTCGTCTTCCTGCGACCGAGATTTGACCTCGAGAACCGTTCGATGCGTTACGGGTTTAATTCCTGAAGACGAATTTTTCGCTTCCCGATGCCTGCCTCTGTTCACGGAGATCGAGGCCTCGGCGAAGGAGGAAGAAGAAGGGGTTCGAGTTCGAGATCGTGAAAGGCAATATTTGGATATTAAAGAGGAGGATGAAGATATAGAAAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCTCTAATTTGGCTGATGGGAGCATGAATGTTTGTGTAAAGAAAGAAGAGATTAGCAGTGTGAAGAAAAGCTTCTCTAATTTTAACACTCAAGGAAGGTTTTGGATCCCAACGCCAGCACAGATCCTCGTCGGGCCGATGCAATTTGCTTGCTCCATCTGCAACAAGTCGTTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCGGAGTACAGAAAGGGCCCAGAATCCCTGAGAGGAACACAGCCAGCAGCAATGCTGAGGCTGCCATGTTATTGCTGCGCTCAGGGGTGCAAGAACAACATCAACCATCCAAGAGCCAAGCCATTGAAGGACTTTAGAACCCTCCAAACCCACTACAAAGAAAGCATGGATCCAAGCCATTTATGTGCAGAAAATGTGGCAAAACTTTGGCTGTCAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGGAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAACGATCCCTCAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCGCGCTGCCCTCTTGATGCCTTTCAAGATGACAAAGAATGCCTCACTGGCTCTGATCGAGAAGATGAGTTCACTCATTAGCCTCTTAAATTAA 1008 46.33 MAEENIFCLQSPTFIEWLKPHDPSSSSSPSISLSSSSSSSCDRDLTSRTVRCVTGLIPEDEFFASRCLPLFTEIEASAKEEEEGVRVRDRERQYLDIKEEDEDIEKVEVGLHIGLPNVGDVSNLADGSMNVCVKKEEISSVKKSFSNFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKESMDPSHLCAENVAKLWLSKEIGEPMKRIVGSFGIAAVAQISNTNDPSKITSDPLAKATPRAALLMPFKMTKNASLALIEKMSSLISLLN 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24450457 24452282 + Lag0025937.1 Lac10g1892 584423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1892 335 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Lac10g1892 335 Gene3D Classic Zinc Finger 168 191 - -
Lac10g1892 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Lac10g1892 335 PANTHER ZINC FINGER PROTEIN WIP2 11 245 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Lac10g1892 335 SUPERFAMILY beta-beta-alpha zinc fingers 160 192 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1892 Lac-Chr10:24450457 Lac9g2839 Lac-Chr9:46386195 8.60E-49 dispersed
Lac10g1892 Lac-Chr10:24450457 Lac8g1295 Lac-Chr8:28218300 5.00E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22791 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1892 - - - 0.0