Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1894 ATGGGTTCAATGGTATTGGAATTACTCCACTCTCTCCCTTCCACAATCTCCGTCGTATTCTTCTCGTTCACGGCCGTGTTCTCTCTGTTCTCCCTCTCCCTGTTCATCCTCCGGCTGAAGCCGTGCTGCAACTGCTCACTCTGCCGCTCCTACCTCTCCTCCTCATGGGCCTCCTCCTTTCCCAATCTCTCCGACTGGTACACCCACCTCCTCTCCCAGTCCCCCTCCGCCACCATCCACCTCCACGTGCTCTCCAACATCCTCACCGCCAACCCGGACAACGTCCAGCACATCCTCAACTCCAACTTCCACAACTACCCCAAGGGCAAGCCCTTCTCCTCCATCCTCGGCGACCTCCTCGGCCACGGCATCTTCAACGTCGACGGGCCCTCCTGGCTCTTCCAGCGCAAGATGGCCAGCTTGGAGCTCGGCAGCCTCTCCGTCCGCTCCCACGCCTTCCACATCGCCACTGCACAGATTCGCTCCAGGCTGCTTCCGCTGCTCTCATCCGTCGCCCACACTAAGGATGTGTTGGACCTTCAGGACGTGTTTAGGCGATTCTCCTTTGATAACATTTGCCGATTCTCCTTCGGCTTGGACCCGGGCTGCTTGACCCTCTCCATGCCCATTTCGGAGTTCGCTGTGGCCTTTGACTTGGCCTCCAGGCTGTCCGCCGAACGGGCTCTCGCGGCCTCCCCGGTTATGTGGAGGATTAAGCGGGTTCTGAGGTTGGGCTCTGAGAGGAAGCTGAGGGAGGCCATTAAGATGGTGGATGGTCTTGCTATGGAAGTCATTCGACAGCGGAGGCAGATTGGCTTCTCTCACCGGAATGATCTTCTATCCAGATTCATGGCTTCCACCGATGATGATCGATATCTCCGAGACATCGTCGTCAGCTTCCTCCTCGCCGGTCGGGACACGGTTGCGTCGGCGTTGACCAGCCTCTTCTGGCTACTCTCGCAGAACCCCGAAGTGGAGTCCGAGATTCTCTCCGAATCCGACCGGGTCATGGGTCCGGACCGGGACGCGGTCCCCAGTTTCGAGAATCTTAGAGACATGCACTACCTTCATGCGGCGGTCTACGAGAACATGCGCCTCTTCCCGCCGGTTCAGTTCGACTCCAAGTTCGCCGAGGAAGATGACATCTTGCCGGACGGCACCTTTGTGCAGAAGGGCACAAGGGTAACTTACCACCCCTACGCCATGGGTCGGATGGACCGGATTTGGGGACCCGATTGTCTCCAGTTCAAACCAGAGAGGTGGCTCAAAAATGGCTGCTTTGCTCCCGAAAATCCGTTTAAGTTCCCGGTTTTCCAGGCCGGTTTGAGGGTTTGTTTGGGGAAGGAGCTGGCCGTGATGGACGTGAAATGCGTGGCAGTGGCGTTGATTCGGAAGTTTAAGGTCCTGTTGGATGGAACGGACGGGGTTGCCCGGTTTGCTCCCGGTCTGACGGCCAGCTGGAGAGGCGGGTTGCCGGTTCGAATTGAAGAAAGAACCACCTGTTGA 1506 57.9 MGSMVLELLHSLPSTISVVFFSFTAVFSLFSLSLFILRLKPCCNCSLCRSYLSSSWASSFPNLSDWYTHLLSQSPSATIHLHVLSNILTANPDNVQHILNSNFHNYPKGKPFSSILGDLLGHGIFNVDGPSWLFQRKMASLELGSLSVRSHAFHIATAQIRSRLLPLLSSVAHTKDVLDLQDVFRRFSFDNICRFSFGLDPGCLTLSMPISEFAVAFDLASRLSAERALAASPVMWRIKRVLRLGSERKLREAIKMVDGLAMEVIRQRRQIGFSHRNDLLSRFMASTDDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPEVESEILSESDRVMGPDRDAVPSFENLRDMHYLHAAVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLQFKPERWLKNGCFAPENPFKFPVFQAGLRVCLGKELAVMDVKCVAVALIRKFKVLLDGTDGVARFAPGLTASWRGGLPVRIEERTTC 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24549545 24551805 + Lag0025939.1 Lac10g1894 584425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1894 501 Gene3D Cytochrome P450 57 500 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 SUPERFAMILY Cytochrome P450 61 498 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 Pfam Cytochrome P450 85 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g1894 501 PANTHER CYTOCHROME P450 40 473 - -
Lac10g1894 501 CDD CYP86A 87 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1894 Lac-Chr10:24549545 Lac10g2284 Lac-Chr10:34921126 4.10E-103 dispersed
Lac10g2876 Lac-Chr10:43299498 Lac10g1894 Lac-Chr10:24549545 3.50E-79 transposed
Lac10g2877 Lac-Chr10:43301779 Lac10g1894 Lac-Chr10:24549545 4.40E-84 transposed
Lac10g1894 Lac-Chr10:24549545 Lac6g1554 Lac-Chr6:20479972 2.10E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1894 K20624 - csv:101207724 847.04