Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2027 ATGTCTCGACGTGGTGGTGGTGGTGGCGGCGGCGGCCGTGGTTCTGGTCGTGGAGGACAGCCCTCTCCGGCTATATCTCGTGGCGGCGCCAGCGGCGGCGGCGGTAGAGCTGGCGGAGGTCGTGGAGGTCGCGGCGGTGGAGGAAGAGATGGAGGTAGGGGAGGTCACTCGGCTCCTCAACAGTTTCATTCTCCATCTCCACAGCCAACTCCGGTTCCTTCCCGTCCTCCTCCTGAGCCTTCAACGGTAGTTTCTTCTAATCCTTCCTCTTCTGGAACTGTTGCTCCCTCGCAGCCAGAGGCCTCTCCCCCAAGAATCGAAGCACAGGTGGAGAAGTTGACATTGGCGCCAGAGAAAGTTCCGCCGTCTTCATCTAAGGCTCTCGCTGTGGTGAAGAGGCCGGGATATGGAACCGTGGGTCGCAAAGTTGTTGTTCGAGCCAATCATTTTCTGGTTGAAGTGGCAGATAAAGATCTCTACCACTATGATGTTTCTATTACACCGGAGGTTTTGTCCAAGAAGGTCTGTCGAGATATAATAAACCAGCTCGTAACAATGTATCAAGAATCTCATTTAGGCGGAAGATTTCTAGCATATGATGGTGGGAAAAGCGTTTATGTCGCTGGTGAACTTCCATTTACCTCTAAAGAGTTCATGATTAAGTTAGTCCGTGAAGAGAATGTTGGCTCTTCCAAACCAACAAGAAAGGATCGTGAATTCAAAGTTTCTATCAAATATGCTTCTAAGCCAGACCTCCATCACCTACAACAGTTTCTACGTGGACGGCAGAGAGATGCTCCACAGGAAACTATCCAACTTCTTGATGTTGTTTTGAGAAGTAAACCATCATCGAGTTATACAGTTGTCGGAAGGTCATTTTTTGATATTAAATTGGGAGAACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGGGGATATTATCAAAGTCTACGGCCTGTACAGATGGGTCTATCTTTAAATATAGATGTGTCAGCTAGATCATTTTATGAACCAATACGTGTGACGGACTATGTTGCTAAACACTTCAATCTAAGGAATTTCTCGAGGCCATTATCGGATCAGGACTGTAGGAAGATAAAACGAGTACTCAGAGGAGTTAAGGTGGCCTTAACATATAGAGAGCATGCCAGGACCTACAAAATTACTGGAATATCATCAGAGCCGATAAACAAATTAATGTTTACTCTTGATGACCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTTCTCAAATTTCCATCTCTACCTGCTCTACAAGCTGGTAACAATGCAAAACCCGTCTATTTGCCTATGGAGGTTTGTACAATTGTTGCTGGGCAGAGATATACTAAAAAATTGAATGAACGCCAAGTAACTGAGCTGTTAAGAGCGACTTGTAAGCGGCCTAACGAGCGTCTAGAGAGTATAGCGGAGATGGTTAAAAGAAATGATTATTCTAAAGATAAAATTGTTGAGGATTTTGGCATTCAAGTTCACCAACAGTTATGTGATGTAGATGCTCGAGTTTTGCCATCTCCACTGCTCAAATATCATGACACAGGCAAAGAATCAAGAGTTGACCCGAGGATGGGTCAGTGGAATATGATAAATAAGAAAATGGTCAATGGTGGCAGAGTGGATTATTGGACATGTGTGAATTTCTCTTCACGGTTGGATCCCGGCCTGCCTGCTGAATTTTGTCTACAATTGGTTAACATGTGCAATAGCAAGGGAATGGCTTTCAACCCTACTCCATGTTTTCCCATACGTACTGCACATGCGAATCAAATTGATAGTGCACTTAGAGAGATTCATAGTCAGTCTGTAAGAAGTTTGGGGCCTCAGAGCAAGTCTCTTCAGTTGCTCATCATTATTTTACCTGACGTTACTGGTTCCTATGGGAAGATTAAGCGGATTTGTGAGACTGAGCTTGGAATCGTTTCACAATGTTGCCAGCCTAGGCAGGCCCAGAAGCTGAACAAGCAATATTTTGAAAATGTGGCCCTTAAAATCAACGTTAAGGTTGGTGGAAGGAACAATGTCTTAAGTGATGCTATTCAGCGTAAGATTCCACTTGTTACAGATCGACCTACGATCATCTTTGGCGCGGATGTTACACACCCGCAGCCAGGAGAGGACTCTAGCCCTTCAATAGCCGCGGTTGTTGCCTCAATGGACTGGCCCGAGATAACGAAGTATAGAGGCATTGTTTCAGCCCAGACTCATCGTGAAGAAATTATCCAAGATTTGTATAAACAAAATCAAGATCCTCAGAGGGGGTTGGTGCATGCAGGGATGATTAGGGAACTTTTCATTGCTTTTAGAAGGTCGACAAACATGAAACCGCACAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGACAGTTTAGTCAAGTTCTGCTCTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCACTTGAAGAGGGCTACCAACCTCCGGTAACCTTTATAGTGGTTCAAAAGAGGCATCACACTCGTCTTTTTCCAACCACTCGGGATACTGACCGCAGTGGAAACATTCTTCCAGGTACTGTTGTCGATACGAAAATCTGTCATCCAACTGAATTTGATTTCTATTTGAACAGCCATGCTGGCATACAGGGAACAAGTAGGCCAACACATTATCACGTTCTATTCGATGAAAACAATTTCAGTGCAGATGCAATGCAAATGCTCACTAATAATCTATGCTACACGTATGCAAGGTGCACACGATCCGTTTCCATTGTTCCACCAGCCTACTATGCCCATCTAGCAGCATTTCGTGCTCGTTATTACATGGAGGGTGATTCATCTGATAGTGGTTCCACGAATTCGGGTGGTGGAAATGTAGAGATTCAAGCCTTGCCAAGCATAAAAGAGAATGTGAAGGATGTGATGTTTTACTGTTGA 2943 44.58 MSRRGGGGGGGGRGSGRGGQPSPAISRGGASGGGGRAGGGRGGRGGGGRDGGRGGHSAPQQFHSPSPQPTPVPSRPPPEPSTVVSSNPSSSGTVAPSQPEASPPRIEAQVEKLTLAPEKVPPSSSKALAVVKRPGYGTVGRKVVVRANHFLVEVADKDLYHYDVSITPEVLSKKVCRDIINQLVTMYQESHLGGRFLAYDGGKSVYVAGELPFTSKEFMIKLVREENVGSSKPTRKDREFKVSIKYASKPDLHHLQQFLRGRQRDAPQETIQLLDVVLRSKPSSSYTVVGRSFFDIKLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPIRVTDYVAKHFNLRNFSRPLSDQDCRKIKRVLRGVKVALTYREHARTYKITGISSEPINKLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPALQAGNNAKPVYLPMEVCTIVAGQRYTKKLNERQVTELLRATCKRPNERLESIAEMVKRNDYSKDKIVEDFGIQVHQQLCDVDARVLPSPLLKYHDTGKESRVDPRMGQWNMINKKMVNGGRVDYWTCVNFSSRLDPGLPAEFCLQLVNMCNSKGMAFNPTPCFPIRTAHANQIDSALREIHSQSVRSLGPQSKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLSDAIQRKIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEITKYRGIVSAQTHREEIIQDLYKQNQDPQRGLVHAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEEGYQPPVTFIVVQKRHHTRLFPTTRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTNSGGGNVEIQALPSIKENVKDVMFYC 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28696935 28703970 + Lag0026072.1 Lac10g2027 584558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2027 980 CDD PAZ_argonaute_like 339 452 - -
Lac10g2027 980 FunFam Argonaute 10 517 691 - -
Lac10g2027 980 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 133 950 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lac10g2027 980 SUPERFAMILY PAZ domain 336 494 IPR036085 GO:0005515(InterPro)
Lac10g2027 980 Pfam PAZ domain 363 469 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac10g2027 980 SMART PAZ_2_a_3 342 475 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac10g2027 980 Pfam Argonaute linker 2 domain 479 525 IPR032472 -
Lac10g2027 980 MobiDBLite consensus disorder prediction 1 105 - -
Lac10g2027 980 Pfam Mid domain of argonaute 536 614 IPR032473 -
Lac10g2027 980 SMART Piwi_a_2 629 945 IPR003165 GO:0003676(InterPro)
Lac10g2027 980 Pfam Piwi domain 630 944 IPR003165 GO:0003676(InterPro)
Lac10g2027 980 SMART DUF1785_2 287 339 IPR014811 -
Lac10g2027 980 Pfam N-terminal domain of argonaute 141 278 IPR032474 -
Lac10g2027 980 Gene3D - 698 980 IPR036397 GO:0003676(InterPro)
Lac10g2027 980 ProSiteProfiles PAZ domain profile. 341 453 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac10g2027 980 Pfam Argonaute linker 1 domain 289 338 IPR014811 -
Lac10g2027 980 Gene3D - 517 691 - -
Lac10g2027 980 FunFam protein argonaute 10-like 697 980 - -
Lac10g2027 980 CDD Piwi_ago-like 497 944 IPR045246 -
Lac10g2027 980 Gene3D paz domain 334 457 - -
Lac10g2027 980 ProSiteProfiles Piwi domain profile. 629 945 IPR003165 GO:0003676(InterPro)
Lac10g2027 980 SUPERFAMILY Ribonuclease H-like 624 946 IPR012337 -
Lac10g2027 980 MobiDBLite consensus disorder prediction 64 83 - -
Lac10g2027 980 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2027 Lac-Chr10:28696935 Lac3g0857 Lac-Chr3:6868219 4.40E-287 dispersed
Lac10g2027 Lac-Chr10:28696935 Lac7g0694 Lac-Chr7:5568726 1.40E-301 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2027 K11593 - csv:116403995 1561.2