Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2035 ATGGAAGTGTTAGAGGTTAAAGCCGATGGAACAGTATCCACTAGGAAGATTAACAGACGCCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAACATGCTATTTTGCTTAATCTGGGTTCGTTGCGAGCAATAGCTATGCAGGATTGTGTCCTCATATTTGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCTAAAAACATGAACGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACTTTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGTACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCTGATGAAGAGGAGGAAGAAATAGAAATGCTGTTGGAAAATTATCTTCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGGCGACTGGAAGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTAGCAGTTGGTGCTTTAGTTGCAGATAATGGGAGGATCATGGGCTTATATGGAAGGACAAGTATCTCCATTGGTATGAGGCCTTTTGGGGTGAACCAAAAGCAAAGCCATGAGGGCTTATGCCCAAAGTGGACAATATCATACAATTGTGGAGATCTGTGTCGTGTCTGGTAG 1002 43.31 MEVLEVKADGTVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVADNGRIMGLYGRTSISIGMRPFGVNQKQSHEGLCPKWTISYNCGDLCRVW 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28802415 28833874 + Lag0026080.1 Lac10g2035 584566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2035 333 Pfam Magnesium transporter MRS2-like 6 260 - -
Lac10g2035 333 Gene3D - 1 77 - -
Lac10g2035 333 FunFam Magnesium transporter MRS2-11, chloroplastic 1 77 - -
Lac10g2035 333 Coils Coil 210 230 - -
Lac10g2035 333 FunFam Magnesium transporter MRS2-11, chloroplastic 79 261 - -
Lac10g2035 333 CDD Mrs2_Mfm1p-like 3 294 IPR039204 -
Lac10g2035 333 Gene3D Magnesium transport protein CorA, transmembrane region 80 261 - -
Lac10g2035 333 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 4 284 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2035 K16075 - - csv:101219314 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2035 Lac-Chr10:28802415 Lac3g1744 Lac-Chr3:17848055 3.90E-17 dispersed
Lac10g2035 Lac-Chr10:28802415 Lac8g0551 Lac-Chr8:8207828 5.20E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g0588 . 1 425 MRS2 Gene Family AT1G16010 85.6 6.2e-196 681.0
Lac6g0802 . 3 379 MRS2 Gene Family AT1G16010 52.4 1.3e-108 391.0
Lac11g2650 . 1 370 MRS2 Gene Family AT5G64560 69.3 3.5e-131 465.7
Lac12g2225 . 1 383 MRS2 Gene Family AT5G64560 63.5 7.1e-116 414.8
Lac12g0153 . 14 495 MRS2 Gene Family AT3G19640 62.9 1.6e-152 537.0
Lac5g2480 . 60 271 MRS2 Gene Family AT3G58970 64.6 1.5e-64 244.6
Lac5g2479 . 1 162 MRS2 Gene Family AT3G58970 69.3 1.4e-54 211.5
Lac6g0802 . 5 379 MRS2 Gene Family AT2G03620 68.1 2.0e-135 479.9
Lac11g0588 . 13 427 MRS2 Gene Family AT2G03620 54.6 5.5e-109 392.1
Lac11g2650 . 1 332 MRS2 Gene Family AT5G09690 65.4 1.9e-109 393.3
Lac12g2225 . 1 345 MRS2 Gene Family AT5G09690 58.5 2.5e-90 329.7
Lac11g0588 . 40 383 MRS2 Gene Family AT5G09690 50.6 1.0e-78 291.2
Lac11g2650 . 34 292 MRS2 Gene Family AT5G09720 60.5 3.6e-75 279.3
Lac12g2225 . 66 305 MRS2 Gene Family AT5G09720 56.1 1.9e-55 213.8
Lac11g0588 . 1 425 MRS2 Gene Family AT1G80900 84.7 1.2e-191 666.8
Lac6g0802 . 1 379 MRS2 Gene Family AT1G80900 53.2 2.7e-106 383.3
Lac10g2035 . 2 284 MRS2 Gene Family AT5G22830 85.2 6.5e-132 468.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41