Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2066 ATGGGACAGATCCAGTACTCCGAGAAGTATTTCGATGATACCTATGAGTACAGGCATGTGGTGCTTCCTCCTGAAGTAGCAAAACTCCTCCCTAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCGATCGGGGTTCAGCAGAGCCGAGGATGGGTGCATTATGCAATTCATCGCCCAGAGCCGCACATCATGTTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAGCAGATTCTTGCTAAGTGA 264 48.48 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQILAK 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29611982 29612688 + Lag0026111.1 Lac10g2066 584597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2066 87 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Lac10g2066 87 SUPERFAMILY Cell cycle regulatory proteins 1 81 IPR036858 GO:0016538(InterPro)
Lac10g2066 87 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Lac10g2066 87 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Lac10g2066 87 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2066 K02219 - - zma:100280869 161.384
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2635 Lac-Chr9:44799783 Lac10g2066 Lac-Chr10:29611982 4.90E-44 transposed
Lac10g2066 Lac-Chr10:29611982 Lac8g1064 Lac-Chr8:22046523 9.20E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1113 Blo03g01072 Blo03g01300 . Bda09g01433 . Bpe08g01297 Bma14g00435 . . Cmo13g00270 . Cma13g00263 . Car13g00200 Sed03g1855 . Cpe20g00722 Bhi08g00132 Tan08g1166 Cmetu12g1345 Lac10g2066 Hepe10g0919 . . Cla02g02112 Cam02g2241 Cec02g2278 Cco02g2320 Clacu02g2221 Cmu02g2156 Cre02g2473 Cone1ag0502 . Cone18ag0244 Cone11ag1331 . Csa06g01245 Chy11g00854 . . . . Bda09g00223 Bpe08g00184 . Bma07g00173 . Sed01g3063 Cmo02g01407 Cmo20g00563 Cma02g01373 . Car02g01152 Car20g00470 Cpe16g00498 . Bhi10g00128 Tan05g0193 Cmetu11g2372 . Hepe08g0936 . . . . . . . . . . Csa01g01406 Chy12g00760 Cme12g00492
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0627 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.4 2.6e-150 528.9
Lac1g1740 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.8 3.7e-96 349.0
Lac2g0052 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.4 1.0e-93 340.9
Lac1g1740 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 5.4e-154 541.2
Lac2g0052 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.8 1.1e-117 420.6
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 5.8e-92 335.1
Lac1g1740 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.8 1.4e-123 439.9
Lac2g0052 . 11 310 Core Cell Cycle Gene Families AT2G38620 58.0 3.8e-94 342.0
Lac2g0052 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.0 3.8e-155 545.0
Lac1g1740 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 1.1e-117 420.6
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.0 4.5e-92 335.5
Lac2g0052 . 8 307 Core Cell Cycle Gene Families AT1G20930 87.3 8.1e-158 553.9
Lac1g1740 . 1 303 Core Cell Cycle Gene Families AT1G20930 66.8 1.1e-119 427.2
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.0 2.6e-95 346.3
Lac9g2934 . 40 555 Core Cell Cycle Gene Families AT5G10270 72.8 1.0e-215 746.9
Lac7g0838 . 101 417 Core Cell Cycle Gene Families AT5G10270 53.5 8.9e-98 355.1
Lac5g2461 . 120 436 Core Cell Cycle Gene Families AT5G10270 55.0 1.5e-97 354.4
Lac3g2293 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 4.4e-97 352.8
Lac10g0606 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.5 2.9e-96 350.1
Lac6g2719 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.6 4.9e-96 349.4
Lac2g3025 . 139 455 Core Cell Cycle Gene Families AT5G10270 53.0 1.4e-95 347.8
Lac9g2169 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.9 2.4e-95 347.1
Lac9g2168 . 128 454 Core Cell Cycle Gene Families AT5G10270 50.1 2.3e-93 340.5
Lac10g0120 . 121 439 Core Cell Cycle Gene Families AT5G10270 51.0 2.5e-92 337.0
Lac13g2098 . 148 450 Core Cell Cycle Gene Families AT5G10270 51.7 9.8e-89 325.1
Lac9g2934 . 104 554 Core Cell Cycle Gene Families AT5G64960 71.5 1.8e-177 619.8
Lac5g2461 . 174 436 Core Cell Cycle Gene Families AT5G64960 54.7 1.4e-81 301.2
Lac7g0838 . 155 417 Core Cell Cycle Gene Families AT5G64960 52.5 9.0e-81 298.5
Lac9g2169 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.6 1.2e-80 298.1
Lac10g0606 . 147 409 Core Cell Cycle Gene Families AT5G64960 53.2 1.2e-80 298.1
Lac9g2168 . 182 446 Core Cell Cycle Gene Families AT5G64960 52.9 2.6e-80 297.0
Lac3g2293 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 2.6e-80 297.0
Lac2g3025 . 193 455 Core Cell Cycle Gene Families AT5G64960 53.6 2.2e-79 293.9
Lac6g2719 . 155 419 Core Cell Cycle Gene Families AT5G64960 50.4 1.4e-78 291.2
Lac10g0120 . 175 439 Core Cell Cycle Gene Families AT5G64960 50.4 1.0e-76 285.0
Lac13g2098 . 202 450 Core Cell Cycle Gene Families AT5G64960 52.4 2.4e-73 273.9
Lac3g0442 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.5 2.3e-173 605.9
Lac3g0442 . 12 342 Core Cell Cycle Gene Families AT1G66750 78.3 1.2e-157 553.5
Lac3g0442 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.7 3.5e-174 608.6
Lac1g0984 . 33 464 Core Cell Cycle Gene Families AT5G63610 77.9 5.2e-193 671.4
Lac6g3006 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.0 4.7e-173 605.1
Lac8g1821 . 5 496 Core Cell Cycle Gene Families AT1G44110 60.2 3.1e-150 529.3
Lac2g0633 . 206 470 Core Cell Cycle Gene Families AT1G44110 57.4 9.3e-86 315.1
Lac4g2834 . 226 528 Core Cell Cycle Gene Families AT1G44110 50.5 8.7e-84 308.5
Lac2g0367 . 91 370 Core Cell Cycle Gene Families AT1G44110 52.5 2.5e-83 307.0
Lac6g0270 . 84 372 Core Cell Cycle Gene Families AT1G44110 50.5 4.2e-78 289.7
Lac6g1238 . 315 576 Core Cell Cycle Gene Families AT1G44110 53.1 6.2e-74 275.8
Lac2g0633 . 206 470 Core Cell Cycle Gene Families AT1G77390 54.3 4.4e-77 286.2
Lac2g0367 . 96 368 Core Cell Cycle Gene Families AT1G77390 51.6 4.2e-75 279.6
Lac2g0633 . 16 467 Core Cell Cycle Gene Families AT5G25380 54.3 4.1e-115 412.5
Lac6g1238 . 147 588 Core Cell Cycle Gene Families AT5G25380 50.8 1.7e-100 364.0
Lac4g2834 . 224 528 Core Cell Cycle Gene Families AT5G25380 59.3 1.9e-96 350.5
Lac8g1821 . 216 489 Core Cell Cycle Gene Families AT5G25380 53.5 8.1e-79 292.0
Lac2g0367 . 96 363 Core Cell Cycle Gene Families AT5G25380 52.6 1.4e-75 281.2
Lac2g0633 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.3e-94 344.4
Lac6g1238 . 190 526 Core Cell Cycle Gene Families AT5G11300 52.3 1.7e-78 290.8
Lac8g1821 . 216 435 Core Cell Cycle Gene Families AT5G11300 55.5 3.0e-67 253.4
Lac2g0367 . 91 307 Core Cell Cycle Gene Families AT5G11300 55.8 3.8e-62 236.5
Lac6g0270 . 91 309 Core Cell Cycle Gene Families AT5G11300 53.0 2.7e-60 230.3
Lac4g2834 . 158 528 Core Cell Cycle Gene Families AT1G15570 57.6 2.4e-115 413.3
Lac2g0367 . 65 360 Core Cell Cycle Gene Families AT1G15570 50.3 3.3e-80 296.6
Lac8g1821 . 217 493 Core Cell Cycle Gene Families AT1G15570 53.2 7.0e-78 288.9
Lac2g0633 . 17 467 Core Cell Cycle Gene Families AT1G80370 50.1 6.4e-103 372.1
Lac8g1821 . 217 494 Core Cell Cycle Gene Families AT1G80370 54.1 4.9e-79 292.7
Lac2g0367 . 91 368 Core Cell Cycle Gene Families AT1G80370 52.2 2.1e-77 287.3
Lac6g0270 . 97 369 Core Cell Cycle Gene Families AT1G80370 53.8 1.1e-75 281.6
Lac6g0270 . 3 371 Core Cell Cycle Gene Families AT5G43080 60.0 1.7e-116 416.8
Lac2g0367 . 1 373 Core Cell Cycle Gene Families AT5G43080 57.1 5.2e-113 405.2
Lac8g1821 . 218 496 Core Cell Cycle Gene Families AT5G43080 51.8 1.4e-78 290.8
Lac2g0633 . 208 467 Core Cell Cycle Gene Families AT5G43080 54.6 1.0e-76 284.6
Lac6g0270 . 1 371 Core Cell Cycle Gene Families AT1G47210 60.5 6.3e-125 444.9
Lac2g0367 . 1 373 Core Cell Cycle Gene Families AT1G47210 54.8 5.0e-114 408.7
Lac12g0195 . 177 441 Core Cell Cycle Gene Families AT1G47210 52.3 3.0e-74 276.6
Lac2g0633 . 208 467 Core Cell Cycle Gene Families AT1G47210 52.7 3.9e-74 276.2
Lac2g0367 . 91 371 Core Cell Cycle Gene Families AT1G47220 59.1 4.6e-95 345.5
Lac6g0270 . 91 371 Core Cell Cycle Gene Families AT1G47220 59.8 1.6e-92 337.0
Lac2g0633 . 208 470 Core Cell Cycle Gene Families AT1G47220 50.9 2.3e-70 263.5
Lac6g0270 . 1 371 Core Cell Cycle Gene Families AT1G47230 58.3 1.8e-119 426.8
Lac2g0367 . 1 374 Core Cell Cycle Gene Families AT1G47230 57.9 1.5e-118 423.7
Lac8g1821 . 219 498 Core Cell Cycle Gene Families AT1G47230 51.1 4.1e-76 282.7
Lac12g0195 . 159 441 Core Cell Cycle Gene Families AT1G47230 51.6 2.7e-75 280.0
Lac2g0633 . 209 467 Core Cell Cycle Gene Families AT1G47230 51.5 2.2e-69 260.4
Lac1g1551 . 1 448 Core Cell Cycle Gene Families AT4G37490 55.2 6.8e-115 411.8
Lac1g1551 . 1 345 Core Cell Cycle Gene Families AT5G06150 53.3 6.6e-81 298.5
Lac9g2754 . 113 305 Core Cell Cycle Gene Families AT5G06150 64.9 2.8e-63 240.0
Lac1g3089 . 354 528 Core Cell Cycle Gene Families AT5G06150 52.6 2.4e-43 173.7
Lac1g1551 . 1 405 Core Cell Cycle Gene Families AT3G11520 57.5 9.4e-108 387.9
Lac9g2754 . 25 366 Core Cell Cycle Gene Families AT3G11520 50.3 5.2e-82 302.4
Lac1g3089 . 355 580 Core Cell Cycle Gene Families AT3G11520 52.2 5.1e-61 232.6
Lac9g2754 . 14 404 Core Cell Cycle Gene Families AT2G26760 55.1 6.6e-109 391.7
Lac1g1551 . 92 441 Core Cell Cycle Gene Families AT2G26760 55.2 2.1e-99 360.1
Lac1g3089 . 208 623 Core Cell Cycle Gene Families AT2G17620 61.0 3.1e-128 456.1
Lac2g0092 . 144 544 Core Cell Cycle Gene Families AT2G17620 53.3 3.1e-107 386.3
Lac1g3089 . 213 580 Core Cell Cycle Gene Families AT4G35620 59.6 1.3e-104 377.5
Lac2g0092 . 144 499 Core Cell Cycle Gene Families AT4G35620 53.0 6.3e-88 322.0
Lac9g2754 . 140 366 Core Cell Cycle Gene Families AT4G35620 50.4 1.0e-53 208.4
Lac2g0092 . 108 542 Core Cell Cycle Gene Families AT1G20610 65.1 1.1e-144 510.8
Lac1g3089 . 185 623 Core Cell Cycle Gene Families AT1G20610 56.3 3.4e-122 436.0
Lac2g0092 . 108 439 Core Cell Cycle Gene Families AT1G76310 64.0 9.5e-104 374.4
Lac1g3089 . 185 520 Core Cell Cycle Gene Families AT1G76310 52.0 1.8e-78 290.4
Lac9g2754 . 138 306 Core Cell Cycle Gene Families AT1G76310 52.6 8.8e-41 165.2
Lac1g1551 . 176 341 Core Cell Cycle Gene Families AT1G76310 51.8 9.7e-40 161.8
Lac6g0031 . 1 331 Core Cell Cycle Gene Families AT1G70210 63.6 2.0e-109 393.3
Lac13g0233 . 1 328 Core Cell Cycle Gene Families AT1G70210 63.4 1.7e-105 380.2
Lac1g2790 . 40 333 Core Cell Cycle Gene Families AT2G22490 54.1 2.1e-80 297.0
Lac6g0280 . 43 318 Core Cell Cycle Gene Families AT4G34160 51.2 1.0e-69 261.5
Lac1g2790 . 58 277 Core Cell Cycle Gene Families AT5G65420 59.9 4.7e-69 258.8
Lac6g0985 . 70 269 Core Cell Cycle Gene Families AT5G65420 55.9 3.0e-60 229.6
Lac1g2790 . 53 232 Core Cell Cycle Gene Families AT5G10440 59.1 1.1e-55 214.2
Lac6g0985 . 65 243 Core Cell Cycle Gene Families AT5G10440 53.9 1.8e-50 196.8
Lac1g2523 . 1 299 Core Cell Cycle Gene Families AT5G27620 60.9 2.6e-97 352.8
Lac10g2066 . 1 87 Core Cell Cycle Gene Families AT2G27960 94.3 3.4e-45 177.9
Lac9g2635 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 3.2e-43 171.4
Lac10g2066 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 4.1e-40 161.0
Lac9g2635 . 1 76 Core Cell Cycle Gene Families AT2G27970 93.4 1.2e-39 159.5
Lac13g0777 . 25 1022 Core Cell Cycle Gene Families AT3G12280 73.9 0.0e+00 1426.8
Lac4g2404 . 14 480 Core Cell Cycle Gene Families AT1G02970 60.5 1.1e-156 550.8