Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2069 ATGCTTTCTCATCCTTCACAACATAATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTTTCTTCTGATTCCCATTCTAGCTCTCTCATTTACAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCCGTCGTCAACGTCGTCATCTGCAACCATCAAAACTCGACCGAGTCCCCGCCCCCGCCCCCGCCATCCATGGCGACTGCAGCCATCAACTCTTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATCTCAACAAATGAATAACCTCATCATAAACGACTCCTCCCTACACAACAATATCGTCGACAACGACCTCCACGGTCAACAGCACCACCATCGACAAGGTCTCGTCGACGACAACCACCGATCGACCACCCTTTTCAACATGGCCAACAACCACAACAATCACAATTGGTACAACACAGCAACTTATAACAACAGTAGTACTACTAGAATTGAAGAGACAAGAACGACAACAACGACAAGGACAATACAAGATCATCGAATTTCGATCGATATTGTTGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTACTGTCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTGAGAATGCACATGCGAGCGCACGGAGACGAGTACAAAGCGAGCGGAGCTTTGAGCAACCCGGAGAAGAGCCATGGAAGAGAGTTGAAGATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAGGGATGCAGATGGAATCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCACTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGATGTCAAATGGCTTTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTTGATTTGTTCGTCGGCCACGCCCCGGCCATCGGTTCGTCGAAAAAAATTTCGGGAAATTTGTGA 1074 45.9 MLSHPSQHNPLVSSSNDHHETLDHLFSSDSHSSSLIYNLSILKEKLHQIQSVVNVVICNHQNSTESPPPPPPSMATAAINSLIQELIMAASSMLFTSQQMNNLIINDSSLHNNIVDNDLHGQQHHHRQGLVDDNHRSTTLFNMANNHNNHNWYNTATYNNSSTTRIEETRTTTTTRTIQDHRISIDIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHGRELKISKMGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVDLFVGHAPAIGSSKKISGNL 357
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 29715411 29716484 - Lag0026114.1 Lac10g2069 584600
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2069 357 SMART c2h2final6 253 286 IPR013087 -
Lac10g2069 357 SMART c2h2final6 291 313 IPR013087 -
Lac10g2069 357 SMART c2h2final6 201 223 IPR013087 -
Lac10g2069 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Lac10g2069 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 351 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Lac10g2069 357 Gene3D Classic Zinc Finger 289 339 - -
Lac10g2069 357 Pfam Zinc finger, C2H2 type 201 223 IPR013087 -
Lac10g2069 357 SUPERFAMILY beta-beta-alpha zinc fingers 199 226 IPR036236 -
Lac10g2069 357 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Lac10g2069 357 FunFam Zinc finger protein 574 200 225 - -
Lac10g2069 357 Gene3D Classic Zinc Finger 187 257 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2069 Lac-Chr10:29715411 Lac2g2022 Lac-Chr2:22621207 2.70E-61 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22794 PF00096 zf-C2H2 9.00E-05 CL0361 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2069 - - - 0.0