Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g2069 | ATGCTTTCTCATCCTTCACAACATAATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTTTCTTCTGATTCCCATTCTAGCTCTCTCATTTACAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCCGTCGTCAACGTCGTCATCTGCAACCATCAAAACTCGACCGAGTCCCCGCCCCCGCCCCCGCCATCCATGGCGACTGCAGCCATCAACTCTTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATCTCAACAAATGAATAACCTCATCATAAACGACTCCTCCCTACACAACAATATCGTCGACAACGACCTCCACGGTCAACAGCACCACCATCGACAAGGTCTCGTCGACGACAACCACCGATCGACCACCCTTTTCAACATGGCCAACAACCACAACAATCACAATTGGTACAACACAGCAACTTATAACAACAGTAGTACTACTAGAATTGAAGAGACAAGAACGACAACAACGACAAGGACAATACAAGATCATCGAATTTCGATCGATATTGTTGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTACTGTCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTGAGAATGCACATGCGAGCGCACGGAGACGAGTACAAAGCGAGCGGAGCTTTGAGCAACCCGGAGAAGAGCCATGGAAGAGAGTTGAAGATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAGGGATGCAGATGGAATCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCACTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGATGTCAAATGGCTTTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTTGATTTGTTCGTCGGCCACGCCCCGGCCATCGGTTCGTCGAAAAAAATTTCGGGAAATTTGTGA | 1074 | 45.9 | MLSHPSQHNPLVSSSNDHHETLDHLFSSDSHSSSLIYNLSILKEKLHQIQSVVNVVICNHQNSTESPPPPPPSMATAAINSLIQELIMAASSMLFTSQQMNNLIINDSSLHNNIVDNDLHGQQHHHRQGLVDDNHRSTTLFNMANNHNNHNWYNTATYNNSSTTRIEETRTTTTTRTIQDHRISIDIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHGRELKISKMGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVDLFVGHAPAIGSSKKISGNL | 357 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29715411 | 29716484 | - | Lag0026114.1 | Lac10g2069 | 584600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g2069 | 357 | SMART | c2h2final6 | 253 | 286 | IPR013087 | - | |
| Lac10g2069 | 357 | SMART | c2h2final6 | 291 | 313 | IPR013087 | - | |
| Lac10g2069 | 357 | SMART | c2h2final6 | 201 | 223 | IPR013087 | - | |
| Lac10g2069 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 201 | 228 | IPR013087 | - | |
| Lac10g2069 | 357 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 23 | 351 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
| Lac10g2069 | 357 | Gene3D | Classic Zinc Finger | 289 | 339 | - | - | |
| Lac10g2069 | 357 | Pfam | Zinc finger, C2H2 type | 201 | 223 | IPR013087 | - | |
| Lac10g2069 | 357 | SUPERFAMILY | beta-beta-alpha zinc fingers | 199 | 226 | IPR036236 | - | |
| Lac10g2069 | 357 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 203 | 223 | IPR013087 | - | |
| Lac10g2069 | 357 | FunFam | Zinc finger protein 574 | 200 | 225 | - | - | |
| Lac10g2069 | 357 | Gene3D | Classic Zinc Finger | 187 | 257 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2069 | Lac-Chr10:29715411 | Lac2g2022 | Lac-Chr2:22621207 | 2.70E-61 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22794 | PF00096 | zf-C2H2 | 9.00E-05 | CL0361 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g2069 | - | - | - | 0.0 |