Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g2145 | ATGGTTATGGCTGCCGATTCCCAGTTCCATGTTCTTGCCGTCGATGACAGCCTCATAGATAGAAAGCTCATCGAGAGGCTTCTCAGAACCTCCTCCTATCAAGTTACTACTGTTGATTCTGGTAGCAAGGCCTTGGAGTTTCTGGGTTTGATTCAAGAAGATGAACATACGAACTTGAAACCCCCTTCTTCTTCTCTTTCCTCCAACAACCATCATCAGGAAGTGGAAGTGAATCTTATCATTACTGATTACTGCATGCCTGGAATGACTGGTTTCGATTTGCTCAAGAAAGTTAAGGAATCGACGTCTCTTAGAAACATACCAGTCGTGATAATGTCATCCGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGAGCGGAAGAGTTCTTCCTGAAGCCAGTCCGATTGTGCGATGTGAATAAACTGAAACCGCACATGATGAAGACGAAATTGAAGGATCAAAATCAAGAAGAAGAAGAAGAATCAACAGAGACGGAATTCGAATCGGTAGAACAGCAAGAACAAAAACAATTGCAGATGAGCAGTAACAAGAGAAAGGCGGCTATGGAGGAAGGTGTGGGGGCGGAGAGAAGAAGAAGAAGGTACAACAACAATGGCGTCGCGACTGTGATTTGA | 645 | 44.03 | MVMAADSQFHVLAVDDSLIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSLSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLKDQNQEEEEESTETEFESVEQQEQKQLQMSSNKRKAAMEEGVGAERRRRRYNNNGVATVI | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 31908164 | 31909507 | - | Lag0026190.1 | Lac10g2145 | 584676 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g2145 | 214 | MobiDBLite | consensus disorder prediction | 192 | 206 | - | - | |
| Lac10g2145 | 214 | Coils | Coil | 151 | 176 | - | - | |
| Lac10g2145 | 214 | ProSiteProfiles | Response regulatory domain profile. | 10 | 150 | IPR001789 | GO:0000160(InterPro) | |
| Lac10g2145 | 214 | Gene3D | - | 10 | 213 | - | - | |
| Lac10g2145 | 214 | CDD | REC_typeA_ARR | 11 | 145 | - | - | |
| Lac10g2145 | 214 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 189 | IPR045279 | GO:0009736(InterPro) | |
| Lac10g2145 | 214 | SMART | REC_2 | 9 | 145 | IPR001789 | GO:0000160(InterPro) | |
| Lac10g2145 | 214 | Pfam | Response regulator receiver domain | 63 | 139 | IPR001789 | GO:0000160(InterPro) | |
| Lac10g2145 | 214 | SUPERFAMILY | CheY-like | 8 | 153 | IPR011006 | - | |
| Lac10g2145 | 214 | MobiDBLite | consensus disorder prediction | 151 | 214 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2145 | Lac-Chr10:31908164 | Lac8g1837 | Lac-Chr8:36649279 | 7.40E-46 | dispersed | |
| Lac12g1121 | Lac-Chr12:14276740 | Lac10g2145 | Lac-Chr10:31908164 | 5.50E-30 | transposed | |
| Lac13g0549 | Lac-Chr13:4036460 | Lac10g2145 | Lac-Chr10:31908164 | 1.60E-24 | transposed | |
| Lac13g0750 | Lac-Chr13:5868797 | Lac10g2145 | Lac-Chr10:31908164 | 1.10E-53 | transposed | |
| Lac1g1457 | Lac-Chr1:35293500 | Lac10g2145 | Lac-Chr10:31908164 | 4.30E-59 | transposed | |
| Lac8g2104 | Lac-Chr8:39471731 | Lac10g2145 | Lac-Chr10:31908164 | 2.50E-54 | transposed | |
| Lac10g2145 | Lac-Chr10:31908164 | Lac13g1253 | Lac-Chr13:11307543 | 6.10E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22796 | PF00072 | Response_reg | 2.80E-17 | CL0304 | Lac | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g2145 | K14492 | - | csv:101220810 | 310.457 |