Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2236 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACGGCCAATAATTCCATGGGTGCGGAGGGAAGCTCTATTCCTTCATCTCGGATCTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCAGCTCTGAACAACAACATCCAGTTTAGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTATCATGGGGTCTCAAACATTGCCATTACAGAAAGAATCCAATCCAAATTTGGTTTCTACATCTAGCGGTCCTCGTGAAAACTGGGGAGAGTCTAACATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGATACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCGCTCGTGGCATATGATTCTAGCAACAAATCCAAAGAAAAATCAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGGGCCCGTCAGCAGGGTATATTTATTTCAAGTTCGGGAGACCAAGCTCATTCAATGAGTGGAAATGGGGCCTTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGCGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTTGACGATATTTTCAGGCTGAAAGGCATTGCAGCCAAAGCTGATGTATTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAACCAATTGGAGCCTTTGACTGAGCAGCAAGTAGTGGGCATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACACCGGCAACGTCGGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGATAATCTTCGTCAACAAACACTTCAACAAATGCACCGCATATTGACAACCCGTCAATCAGCCCGTGCGCTTCTCGCAATAAATGACTACTTCTCCCGTCTCAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 1407 45.42 MGSRTVKIGADDINKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSALNNNIQFSSLIKPLASTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLVAYDSSNKSKEKSADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVNQLEPLTEQQVVGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33883004 33891367 + Lag0026281.1 Lac10g2236 584767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2236 468 Coils Coil 202 229 - -
Lac10g2236 468 FunFam BZIP family transcription factor 182 231 - -
Lac10g2236 468 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac10g2236 468 Pfam bZIP transcription factor 182 223 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2236 468 MobiDBLite consensus disorder prediction 110 144 - -
Lac10g2236 468 CDD bZIP_HBP1b-like 183 235 - -
Lac10g2236 468 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2236 468 SMART brlzneu 179 242 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2236 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2236 468 MobiDBLite consensus disorder prediction 110 185 - -
Lac10g2236 468 PANTHER TRANSCRIPTION FACTOR TGA9 137 468 - -
Lac10g2236 468 Gene3D - 182 233 - -
Lac10g2236 468 MobiDBLite consensus disorder prediction 145 160 - -
Lac10g2236 468 ProSiteProfiles DOG1 domain profile. 248 465 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac10g2236 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2236 Lac-Chr10:33883004 Lac6g0834 Lac-Chr6:7189251 8.40E-135 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22797 PF14144 DOG1 8.30E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2236 K14431 - csv:101219149 840.106