Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2258 ATGGCGCTGGAAATTGTGGATCCAAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATTCGTTCCTCTTCATCTTCGACCTTCCGCATTTACGCTTCTCTCCCCAATTGCCCGAGGGGCCGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAAAGAGTTGCTGTAAAGAAGCCCGTCTTGTCTACTTCTGAGGACTTGGACAAGTTTCATAAGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGTATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCAAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTCGCGGAGAAATTGCATGCTGAAGAATGGAATCCAAGTATCGATCAGGTGCTCATGATCACTCTAGAGTTAGCAAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTACATCCATACTTGGCTGATTTTGGTTTAGCAATACACCGGAAACATCTGAAAGGAATCTCTGCAGAAAATTGGAAGTCATCTGGAAAGCCAACAGGTGGTTTCTACAAGAAAAACATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTATAGTTTTGATTTGGAGAATAAGGCGTACTGCGCCATTAAGAAGCTGGATGTTGATCTTGCAAAAGCAAGGGAACATAATTGTAACAACTCAATGAGATTGAAGAATTTCGTTCTCAAGCTTATGATAATGCCAAGTGGTAAAATGAAACCTCGATGGTCCAATCCTTTTCTAATCAAAGAGGTGTTCCCTCATGGGGCGATTGAGTTGCAAGTCGGTGATGGACGATCTTTTAAAGTGAATGGGCAACGAATTAAACACTATTTTGGCATGGAAGAACGCAAATTGGATAACATCCTGCTGAATGAGCCAAATTAG 987 41.84 MALEIVDPNTCIRGCCSSKFVPLHLRPSAFTLLSPIARGAESTVYEGRLDGKRVAVKKPVLSTSEDLDKFHKELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSIDQVLMITLELAKALQYLHNLGIVHRDVKPANVLLDKDLHPYLADFGLAIHRKHLKGISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKEIHTDLSDVYSFDLENKAYCAIKKLDVDLAKAREHNCNNSMRLKNFVLKLMIMPSGKMKPRWSNPFLIKEVFPHGAIELQVGDGRSFKVNGQRIKHYFGMEERKLDNILLNEPN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34301054 34307414 + Lag0026303.1 Lac10g2258 584789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2258 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2258 328 Pfam Protein kinase domain 33 226 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2258 328 SMART serkin_6 30 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2258 328 ProSiteProfiles Protein kinase domain profile. 30 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2258 328 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 226 IPR051681 GO:0004674(PANTHER)
Lac10g2258 328 Gene3D Transferase(Phosphotransferase) domain 1 23 228 - -
Lac10g2258 328 SUPERFAMILY Protein kinase-like (PK-like) 20 226 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2258 Lac-Chr10:34301054 Lac1g3168 Lac-Chr1:51859632 9.70E-21 dispersed
Lac10g2258 Lac-Chr10:34301054 Lac13g2230 Lac-Chr13:34643746 4.40E-13 wgd
Lac10g2258 Lac-Chr10:34301054 Lac2g2314 Lac-Chr2:31681395 2.10E-15 wgd
Lac10g2258 Lac-Chr10:34301054 Lac8g1094 Lac-Chr8:23149549 8.80E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85683 PF00069 Pkinase 2.00E-35 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2258 - - - 0.0