Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2258 | ATGGCGCTGGAAATTGTGGATCCAAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATTCGTTCCTCTTCATCTTCGACCTTCCGCATTTACGCTTCTCTCCCCAATTGCCCGAGGGGCCGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAAAGAGTTGCTGTAAAGAAGCCCGTCTTGTCTACTTCTGAGGACTTGGACAAGTTTCATAAGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGTATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCAAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTCGCGGAGAAATTGCATGCTGAAGAATGGAATCCAAGTATCGATCAGGTGCTCATGATCACTCTAGAGTTAGCAAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTACATCCATACTTGGCTGATTTTGGTTTAGCAATACACCGGAAACATCTGAAAGGAATCTCTGCAGAAAATTGGAAGTCATCTGGAAAGCCAACAGGTGGTTTCTACAAGAAAAACATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTATAGTTTTGATTTGGAGAATAAGGCGTACTGCGCCATTAAGAAGCTGGATGTTGATCTTGCAAAAGCAAGGGAACATAATTGTAACAACTCAATGAGATTGAAGAATTTCGTTCTCAAGCTTATGATAATGCCAAGTGGTAAAATGAAACCTCGATGGTCCAATCCTTTTCTAATCAAAGAGGTGTTCCCTCATGGGGCGATTGAGTTGCAAGTCGGTGATGGACGATCTTTTAAAGTGAATGGGCAACGAATTAAACACTATTTTGGCATGGAAGAACGCAAATTGGATAACATCCTGCTGAATGAGCCAAATTAG | 987 | 41.84 | MALEIVDPNTCIRGCCSSKFVPLHLRPSAFTLLSPIARGAESTVYEGRLDGKRVAVKKPVLSTSEDLDKFHKELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSIDQVLMITLELAKALQYLHNLGIVHRDVKPANVLLDKDLHPYLADFGLAIHRKHLKGISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKEIHTDLSDVYSFDLENKAYCAIKKLDVDLAKAREHNCNNSMRLKNFVLKLMIMPSGKMKPRWSNPFLIKEVFPHGAIELQVGDGRSFKVNGQRIKHYFGMEERKLDNILLNEPN | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34301054 | 34307414 | + | Lag0026303.1 | Lac10g2258 | 584789 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2258 | 328 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2258 | 328 | Pfam | Protein kinase domain | 33 | 226 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2258 | 328 | SMART | serkin_6 | 30 | 281 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2258 | 328 | ProSiteProfiles | Protein kinase domain profile. | 30 | 328 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2258 | 328 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 33 | 226 | IPR051681 | GO:0004674(PANTHER) | |
Lac10g2258 | 328 | Gene3D | Transferase(Phosphotransferase) domain 1 | 23 | 228 | - | - | |
Lac10g2258 | 328 | SUPERFAMILY | Protein kinase-like (PK-like) | 20 | 226 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2258 | Lac-Chr10:34301054 | Lac1g3168 | Lac-Chr1:51859632 | 9.70E-21 | dispersed | |
Lac10g2258 | Lac-Chr10:34301054 | Lac13g2230 | Lac-Chr13:34643746 | 4.40E-13 | wgd | |
Lac10g2258 | Lac-Chr10:34301054 | Lac2g2314 | Lac-Chr2:31681395 | 2.10E-15 | wgd | |
Lac10g2258 | Lac-Chr10:34301054 | Lac8g1094 | Lac-Chr8:23149549 | 8.80E-14 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85683 | PF00069 | Pkinase | 2.00E-35 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2258 | - | - | - | 0.0 |