Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2273 ATGGGATTCATGGAATGCCTTGCCCATTTCTTTCAAAATGCAAACCCTTACATCGCAGTCATCTCCCTCCAATTCGGCTACGCCGGAATGAATATCATCTCCACCGTCTCCCTCAACCGCGGTATGAGCCACTACGTCCTTGTCGTCTACCGACATGCCTTCGCCACCGCTGTCATGGCTCCCTTTGCTCTTGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATTGAAGATTTTTGTTCAGATGTTTGTTCTGGCTCTTCTTGGGCCACTGATCGATCAGAACTTCTACTATGTGGGGCTGAAAATGACATCTCCAACTTTCTCCTGCGCCATAAGCAACATGCTTCCTTCAATGACATTTGTCATGGCAGTTCTTTGCAGGATGGAGAAGTTAGACTTGAGAAAAGTGAGATGCCAAGCCAAGTTGTTTGGAACAGTGGTGACGGTGGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTGGACCGGGCACGGCCGCCACCCAAACTTGCCACCGTCGGCAGATGCGGCGGCGCTCAACCACCACAACGACGGAGATTTCATCAAAGGCTCCATTTTGCTCATCATCGCCACTTTAGCTTGGGCTGCCTTCTTCATCCTGCAAGTCATAACCTTGAGAAAATACACAGCTCATCTTTCGCTAACAACCATGGTTTGCTTTCTGGGAACCCTTCAGGCCATTGTTGTCACCTTCGCCATGGAACACCGCCCCTCCGCCTGGGCCATCGGCTGGGACCTGAACCTTCTCGCCGCCGCTTATGCGGGGATTGTGACCTCAGGGGTGGCGTATTATGTGCAAGGATTGGTTATGAAGACCAAAGGGCCAGTTTTCGTTACAGCTTTTAGCCCTCTGATGATGGTGATTGTTGCTTTCATGGGCTCTCTCATCTTGGCTGAAAAAATTTATGTTGGAGGGATAATTGGAGCAGTGCTGATTGTAATAGGGCTTTACTCTGTTTTGTGGGGAAAGTATAAGGAAAGCAAAGAGAAGGAAAGTGGAGAGATTATTGAAGCAGTGAAAGGTGGAGAATTGCCTGTAATAAATGAAGGCATTGAACCAATTCAAAATAAAGATGCTTTGGCCATTACTATTCCATCCATGGCTGCAACTAACATGGAGAAGAAGCTTCAAGGCACCAACCAGCCAAATTAA 1194 47.65 MGFMECLAHFFQNANPYIAVISLQFGYAGMNIISTVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITLKIFVQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVLCRMEKLDLRKVRCQAKLFGTVVTVVGAMLMTFYKGSVINFFWTGHGRHPNLPPSADAAALNHHNDGDFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTMVCFLGTLQAIVVTFAMEHRPSAWAIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKESGEIIEAVKGGELPVINEGIEPIQNKDALAITIPSMAATNMEKKLQGTNQPN 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34563910 34566296 - Lag0026318.1 Lac10g2273 584804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2273 397 PANTHER WAT1-RELATED PROTEIN 18 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac10g2273 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Lac10g2273 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 338 - -
Lac10g2273 397 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020(InterPro)
Lac10g2273 397 Pfam EamA-like transporter family 20 157 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2273 Lac-Chr10:34563910 Lac1g1566 Lac-Chr1:36941275 4.50E-129 dispersed
Lac13g0802 Lac-Chr13:6425042 Lac10g2273 Lac-Chr10:34563910 2.10E-129 transposed
Lac10g2273 Lac-Chr10:34563910 Lac6g2165 Lac-Chr6:37951005 3.40E-28 wgd
Lac10g2273 Lac-Chr10:34563910 Lac8g1085 Lac-Chr8:22743759 4.10E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2273 - - - 0.0