Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2280 ATGAAAGATCAGAAGACAACCCATATCAGAAAGGATCAAGATTTACTCTCCCGGTTCATGGGAGACCAATGCAACGACAACTCCCTCGAATTCCTCCGAGACATAATCATTAGCTTCATCCTCGCCGGTCGAGACTCCACATCTTCAGCTCTAACATGGTTCTTCTGGATCTTATCCTCTCGACCCGACATCGAGCAAAAAATCCTCACAGAACTCGAAACGATCCGATCAAGAACCGGCAAGCGAATCGGAGAAATGTACAGCTTCGACGAACTCCGAGACATGCACTATCTACAAGCAGCAATATCCGAGACTCTCCGGCTGTACCCGCCGGTGCCAATGAACACAAAAGATTGCGAGAGCGACGAAATCTTACCGGACGGGACGTTTGTTGGGAAGAGTTGGTTTGTTATGTACAATACGTATGCGATGGGGAGGATGGAGAGCATATGGGGCTCAAATTATGGAGAATTTTTGCCGGAGAGGTGGCTGGAAAATGGGGTTTGTAGGACGGAGAGCCCGTTTCGGTTCCCGATATTTCACGCGGGACCGAGGATGTGTTTGGGAAAGGATATGGCTTATATTCAAATGAAGTCCATAGCTGCGGCTGTGATCGAGAGGTTTGAGGTGGAAATGGTGGAGAAGAAGAAGACTCCGAGAATGAAGAATGGGTTGCAGGTGGTAGTGAAAAAGAGAGACACGAGTGTGCCCATTTGA 717 48.4 MKDQKTTHIRKDQDLLSRFMGDQCNDNSLEFLRDIIISFILAGRDSTSSALTWFFWILSSRPDIEQKILTELETIRSRTGKRIGEMYSFDELRDMHYLQAAISETLRLYPPVPMNTKDCESDEILPDGTFVGKSWFVMYNTYAMGRMESIWGSNYGEFLPERWLENGVCRTESPFRFPIFHAGPRMCLGKDMAYIQMKSIAAAVIERFEVEMVEKKKTPRMKNGLQVVVKKRDTSVPI 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34857255 34857971 - Lag0026325.1 Lac10g2280 584811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2280 238 PRINTS E-class P450 group I signature 187 210 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS E-class P450 group I signature 51 77 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS E-class P450 group I signature 177 187 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS E-class P450 group I signature 99 117 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS E-class P450 group I signature 31 48 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS P450 superfamily signature 178 187 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS P450 superfamily signature 100 111 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS P450 superfamily signature 187 198 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PRINTS P450 superfamily signature 42 59 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 180 189 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac10g2280 238 Pfam Cytochrome P450 10 233 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 PANTHER CYTOCHROME P450 10 224 - -
Lac10g2280 238 SUPERFAMILY Cytochrome P450 8 232 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2280 238 Gene3D Cytochrome P450 1 237 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2280 Lac-Chr10:34857255 Lac10g2291 Lac-Chr10:35049661 3.70E-102 dispersed
Lac10g2280 Lac-Chr10:34857255 Lac10g2284 Lac-Chr10:34921126 6.40E-115 proximal
Lac10g2280 Lac-Chr10:34857255 Lac11g2232 Lac-Chr11:38358842 2.10E-12 wgd
Lac10g2280 Lac-Chr10:34857255 Lac12g1712 Lac-Chr12:32960627 4.70E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2280 - - - 0.0