Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2310 ATGAGGGAAGATGATTCAAATTGGTTTTCAAAATGGGAACAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCTCAAACCCTAATTACCCCTGATCTTGCTTTGGCATTTGACATCAGAAACCCAAATAGTTCCATCAACAACACCCACCCACCTCCGCCGCCGCCGCCGCCTCCTCCGGTGACTGCCCAGCCCACTTCAGCCGATTTTGCGGACTCCGCCGATTTGGGGTCCGGAGCCGGCGCCGGGGACGAACCTGCCAGAACCCTGAAGCGGCCGCGGCTGGTCTGGACTCCACAACTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGGATAAAAAATGCCGTCCCAAAAACCATAATGCAGCTTATGAGCGTCGATGGCTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGCGGCGGCGGAGCTAGCGGCGGCGCGGGATTGGCTTCAGCCGCTTCGGATCCCGCCACTGACCATTTGTTCGCCAGTTCCCCTGTTCCGCCGCATTTTCTCCACTCTGCTCGGGCGAATTCCGACCATTTCTTACCGTTTGTGCCTGTCGGAGCTCTGCAGCACCACCACCAGATAGCCGCCGCCGCCGCCGCTCAGTACCATCGGCAAGTGGCCCATTTTGGGTCGCCGCCGAATGGACAGTTTGAGCATCCGTTTATGGCTCGGCCTGTTCACCGGATTGGGGCTCCGGTGAATACTCCGGCAACGAATTACGGCGAGGATTTGGATTCCGGTAATGGAACAGGAGGGAGAAAGGTTCTCACTCTTTTCCCCACCGGGAATGATTAA 861 56.56 MREDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDIRNPNSSINNTHPPPPPPPPPPVTAQPTSADFADSADLGSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASGGAGLASAASDPATDHLFASSPVPPHFLHSARANSDHFLPFVPVGALQHHHQIAAAAAAQYHRQVAHFGSPPNGQFEHPFMARPVHRIGAPVNTPATNYGEDLDSGNGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35371390 35372250 - Lag0026355.1 Lac10g2310 584841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2310 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 149 IPR017930 -
Lac10g2310 286 MobiDBLite consensus disorder prediction 260 286 - -
Lac10g2310 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677(InterPro)
Lac10g2310 286 MobiDBLite consensus disorder prediction 48 65 - -
Lac10g2310 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 228 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2310 286 MobiDBLite consensus disorder prediction 40 88 - -
Lac10g2310 286 MobiDBLite consensus disorder prediction 1 23 - -
Lac10g2310 286 FunFam Two-component response regulator 89 152 - -
Lac10g2310 286 Pfam Myb-like DNA-binding domain 96 145 IPR001005 -
Lac10g2310 286 SUPERFAMILY Homeodomain-like 90 150 IPR009057 -
Lac10g2310 286 Gene3D - 90 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2310 Lac-Chr10:35371390 Lac7g2753 Lac-Chr7:46695277 2.60E-38 dispersed
Lac1g1554 Lac-Chr1:36834410 Lac10g2310 Lac-Chr10:35371390 2.50E-108 wgd
Lac10g2310 Lac-Chr10:35371390 Lac11g0905 Lac-Chr11:9768244 8.50E-21 wgd
Lac10g2310 Lac-Chr10:35371390 Lac8g1421 Lac-Chr8:31047508 5.50E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22799 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2310 - - - 0.0