Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2310 | ATGAGGGAAGATGATTCAAATTGGTTTTCAAAATGGGAACAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCTCAAACCCTAATTACCCCTGATCTTGCTTTGGCATTTGACATCAGAAACCCAAATAGTTCCATCAACAACACCCACCCACCTCCGCCGCCGCCGCCGCCTCCTCCGGTGACTGCCCAGCCCACTTCAGCCGATTTTGCGGACTCCGCCGATTTGGGGTCCGGAGCCGGCGCCGGGGACGAACCTGCCAGAACCCTGAAGCGGCCGCGGCTGGTCTGGACTCCACAACTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGGATAAAAAATGCCGTCCCAAAAACCATAATGCAGCTTATGAGCGTCGATGGCTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGCGGCGGCGGAGCTAGCGGCGGCGCGGGATTGGCTTCAGCCGCTTCGGATCCCGCCACTGACCATTTGTTCGCCAGTTCCCCTGTTCCGCCGCATTTTCTCCACTCTGCTCGGGCGAATTCCGACCATTTCTTACCGTTTGTGCCTGTCGGAGCTCTGCAGCACCACCACCAGATAGCCGCCGCCGCCGCCGCTCAGTACCATCGGCAAGTGGCCCATTTTGGGTCGCCGCCGAATGGACAGTTTGAGCATCCGTTTATGGCTCGGCCTGTTCACCGGATTGGGGCTCCGGTGAATACTCCGGCAACGAATTACGGCGAGGATTTGGATTCCGGTAATGGAACAGGAGGGAGAAAGGTTCTCACTCTTTTCCCCACCGGGAATGATTAA | 861 | 56.56 | MREDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDIRNPNSSINNTHPPPPPPPPPPVTAQPTSADFADSADLGSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASGGAGLASAASDPATDHLFASSPVPPHFLHSARANSDHFLPFVPVGALQHHHQIAAAAAAQYHRQVAHFGSPPNGQFEHPFMARPVHRIGAPVNTPATNYGEDLDSGNGTGGRKVLTLFPTGND | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35371390 | 35372250 | - | Lag0026355.1 | Lac10g2310 | 584841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2310 | 286 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 98 | 149 | IPR017930 | - | |
Lac10g2310 | 286 | MobiDBLite | consensus disorder prediction | 260 | 286 | - | - | |
Lac10g2310 | 286 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 94 | 146 | IPR006447 | GO:0003677(InterPro) | |
Lac10g2310 | 286 | MobiDBLite | consensus disorder prediction | 48 | 65 | - | - | |
Lac10g2310 | 286 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 4 | 228 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2310 | 286 | MobiDBLite | consensus disorder prediction | 40 | 88 | - | - | |
Lac10g2310 | 286 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lac10g2310 | 286 | FunFam | Two-component response regulator | 89 | 152 | - | - | |
Lac10g2310 | 286 | Pfam | Myb-like DNA-binding domain | 96 | 145 | IPR001005 | - | |
Lac10g2310 | 286 | SUPERFAMILY | Homeodomain-like | 90 | 150 | IPR009057 | - | |
Lac10g2310 | 286 | Gene3D | - | 90 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2310 | Lac-Chr10:35371390 | Lac7g2753 | Lac-Chr7:46695277 | 2.60E-38 | dispersed | |
Lac1g1554 | Lac-Chr1:36834410 | Lac10g2310 | Lac-Chr10:35371390 | 2.50E-108 | wgd | |
Lac10g2310 | Lac-Chr10:35371390 | Lac11g0905 | Lac-Chr11:9768244 | 8.50E-21 | wgd | |
Lac10g2310 | Lac-Chr10:35371390 | Lac8g1421 | Lac-Chr8:31047508 | 5.50E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22799 | PF00249 | Myb_DNA-binding | 2.00E-08 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2310 | - | - | - | 0.0 |