Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2390 ATGGAGATCTTACAGGCGCTCGATGCTCAAGTTCTCATTGGTTTAGCAGCGGCCCTGCTTGCCATTGTTGCTGGTGCTATTGTCCTCTTTTCCTCCAGAAAACCCGCCTCTAGAGCCTGCTTGGATCCTGAGAACTTTAAGGAGTTTAAACTTGTTAAGCGTACAAAGCTGAGCCATAATGTGGCGAAGTTCACTTTTATTCTTCCGATGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACCCCAACTACTTTGGACTCTGATGTTGGATACTTTGAACTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCACATCATTTTCGAGAAATGCGTGTTGGGGATTATCTTGCTGTAAAGGGACCAAAGGGACGTTTTAAGTATCAACCCGGTCAAGTTAGGGCATTGGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGAAGAATTGGATCTTCTTGCCCGTAGATACCCTGATCGCTTCAAGATCTACTTCGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGTGGCGTTGGCTTTGTAACCAAGGAAATGATTCAAGCGCATTGCCCTGCACCTGCCGCTGACATTCAGATTCTACGATGCGGCCCGCCACCGATGAACAAGGCCATGGCTGCACACCTTGATGAACTCGGCTATACACCTGAAATGCAGTTTCAATTCTAA 753 46.35 MEILQALDAQVLIGLAAALLAIVAGAIVLFSSRKPASRACLDPENFKEFKLVKRTKLSHNVAKFTFILPMPDSILGLPIGQHLSCRGKDSQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFKYQPGQVRALGMLAGGSGITPMYQEELDLLARRYPDRFKIYFVLNQPPEVWDGGVGFVTKEMIQAHCPAPAADIQILRCGPPPMNKAMAAHLDELGYTPEMQFQF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36703378 36707812 + Lag0026435.1 Lac10g2390 584921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2390 250 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Lac10g2390 250 FunFam NADH-cytochrome b5 reductase 169 250 - -
Lac10g2390 250 PRINTS Cytochrome B5 reductase signature 133 147 - -
Lac10g2390 250 PRINTS Cytochrome B5 reductase signature 97 104 - -
Lac10g2390 250 PRINTS Cytochrome B5 reductase signature 156 175 - -
Lac10g2390 250 PRINTS Cytochrome B5 reductase signature 75 86 - -
Lac10g2390 250 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 246 IPR039261 -
Lac10g2390 250 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 169 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lac10g2390 250 Gene3D - 167 250 IPR039261 -
Lac10g2390 250 FunFam NADH-cytochrome b5 reductase 39 138 - -
Lac10g2390 250 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Lac10g2390 250 CDD cyt_b5_reduct_like 49 250 - -
Lac10g2390 250 Pfam Oxidoreductase NAD-binding domain 167 233 IPR001433 GO:0016491(InterPro)
Lac10g2390 250 Gene3D Translation factors 36 141 - -
Lac10g2390 250 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2390 K00326 - - csv:101212931 445.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2390 Lac-Chr10:36703378 Lac9g2955 Lac-Chr9:47301682 6.80E-91 dispersed
Lac1g1605 Lac-Chr1:37275908 Lac10g2390 Lac-Chr10:36703378 3.40E-112 wgd
Lac10g2390 Lac-Chr10:36703378 Lac13g2348 Lac-Chr13:37259634 2.50E-08 wgd
Lac10g2390 Lac-Chr10:36703378 Lac13g1753 Lac-Chr13:20110957 1.40E-06 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86