Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2489 ATGAATCATTTGACTGTTGAAACAGAAGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATCGATGCCTTTAAGAGATCAATTGAGCGTGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGCCGATTGCGAGGGTCGAAGCAGATGACCAATGAGCACAGAACTCCTTTAATGGTTGCTGCCACTTATGGTAGCATTGAGGTTCTGAAGCTTATTATTTCTCTTTCTTGTGCTGATGTAAACCGCGCTGTTGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGAATGCAAATGCTGTAGAAATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGATCCAAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATTGTTACCCCCCTAAGGCACGCAGAGTTTAAGTCAATCCTTACAGAACTTCTTAAAACAAATGGTTTTTCTGGTGAAGGAAATCTTGATGTTTCAACAGGTGCTAGAAATTCGCATTCTCCTCCCCTTTTGTCTCCTCTGAACGTCCCTTCATCTGCATCGGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAATGATTTTCCTATGTATTCTGCATCCGAGAAGAAAGAATACCCCGTTGATCTCTCTCTTCCAGACATCAAGAACAGTATCTACTCTACTGATGAATTCCGAATGTATTCATTCAAGGTTCGACCCTGCTCACGGGCTTACTCTCATGATTGGACCGAGTGTCCCTTTGTCCATCCTGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGTGAATATGCTCACGGGGTGTTTGAGTGCTGGTTGCACCCAGCACAATATCGGACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACATACGACTGAGGAACTGCGACCATTGTATGTTTCAACTGGCTCTGCTGTTCCTTCACCGCGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCCCCCTCTGCCAATGGCATGTCCCACTCGTCTGTGGCTTGGCCCCAACCGAATGTACCTGCCTTACATCTTCCAGGAAGCAATATTCAGTCTAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATTCCTGTGGAGGACTTTGATTATCTGAGTGATTTTGATCTGCAACAACAGCAGCTCCTTAATGACTTGAATTGTCTTTCTCAGCCACCATTAAGTTCAAATTCATTGAGCCGTTCTGGTCGGCTGAAAACTCTGACACCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTTTGGCTTCGGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCGCCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCATCATCTGGGAGGATGTCCCCACGAAATTTAGAACCCATCTCTCCGATGGGCTCACGGTTGTCCATGTTAGCTCAAAGAGAGAAACAACAGCAATTTCGCAGCCTAAGCTCACGTGAACTCGGTGCAAATTCTGCTTCTATTGTTGGTTCCCCTGCAAGTTCTTGGTCTAAATGGGGGCATTCTAATGGGAGACCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTCGGCGATCATCATCGTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAGTCACTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAACTCGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAGCATGAACTCCCAAATGGAGTCAGTTGATCATGCTGCATTGGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTCGTCGCGCAACAAAACTGA 2112 45.6 MNHLTVETEDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEHRTPLMVAATYGSIEVLKLIISLSCADVNRAVGLDRSTALHCAASGGNANAVEIVKRLLAAGADPNMVDGNGHRPVDVIVTPLRHAEFKSILTELLKTNGFSGEGNLDVSTGARNSHSPPLLSPLNVPSSASELVSSPTKSKLNDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDYLSDFDLQQQQLLNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPASSWSKWGHSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNSGGDSFVSSGESSSMNSQMESVDHAALGAWLEQMQLDHLVAQQN 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38561500 38563611 - Lag0026534.1 Lac10g2489 585020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2489 703 MobiDBLite consensus disorder prediction 166 196 - -
Lac10g2489 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
Lac10g2489 703 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Lac10g2489 703 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Lac10g2489 703 Gene3D - 8 157 IPR036770 -
Lac10g2489 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Lac10g2489 703 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Lac10g2489 703 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Lac10g2489 703 Gene3D - 272 335 - -
Lac10g2489 703 MobiDBLite consensus disorder prediction 660 680 - -
Lac10g2489 703 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Lac10g2489 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lac10g2489 703 PANTHER UNKEMPT FAMILY MEMBER 51 648 IPR045234 -
Lac10g2489 703 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Lac10g2489 703 MobiDBLite consensus disorder prediction 647 680 - -
Lac10g2489 703 SUPERFAMILY Ankyrin repeat 6 138 IPR036770 -
Lac10g2489 703 Pfam Ankyrin repeats (3 copies) 54 126 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2489 Lac-Chr10:38561500 Lac11g0514 Lac-Chr11:5348094 2.70E-246 dispersed
Lac10g2489 Lac-Chr10:38561500 Lac3g0988 Lac-Chr3:8046319 6.00E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22805 PF12796 Ank_2 2.60E-09 CL0465 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2489 - - - 0.0