Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2499 ATGGAAAATCATGGCGATGATCCAAACAGCCCGAATCACAGCTCCGAGCGGGCGGAGCCGGTGAGGTCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATCTTGGAATCCATTTTCAACAGCGGAATGGTCAATCCTCCCAAGGATGAGACTGTTAGAATTAGAAAGTTGCTTGAGAAATTTGGCTCTGTTGGGGATGCCAACGTTTTCTACTGGTTTCAGAACCGCCGCTCTCGGTCTCGCCGCCGCCAGCGCCAGCTGCAGGCGGCCGCGAGTCACCAAGGCGGTGGTGCAGTTCACTATGACGGTGGTTGTGACGGCGGTGGCGGTAGTGTCATGAATTTCGCCGCTTCCTCCTCTTACCTGGGTGGAGGAGGGTCCTCCTCCACCACCTCTGGGATTGGAGGAGATGGTGGTAGTGGTGGCGGCTGCGGTGGTTTTTCAATGTCGGGTCATATGGGTTTCTCTGAAATTGATCAACCGATGGTTGTAACCCCGTCGTTTTGCCCTTCGGAGACCTCGAACTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTTCCAAAAGGGCCAGTGGACATGAAGGCAATGTTTGGACAGGAGACAGTGTTGGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCACTGCAAAGTTTGCAGCATGGTGAAAGCTACTTTCTGATATGCTTTGTTGTTGGTTCTAAATTTTTGGATATGCTGATGGGAGGGTTTTTGGGAATGGTTAGTGGTTAA 789 50.32 MENHGDDPNSPNHSSERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGGAVHYDGGCDGGGGSVMNFAASSSYLGGGGSSSTTSGIGGDGGSGGGCGGFSMSGHMGFSEIDQPMVVTPSFCPSETSNLEFQSGYIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLQSLQHGESYFLICFVVGSKFLDMLMGGFLGMVSG 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38735206 38736670 + Lag0026544.1 Lac10g2499 585030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2499 262 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677(InterPro)
Lac10g2499 262 FunFam WUSCHEL-related homeobox 11 22 89 - -
Lac10g2499 262 Gene3D - 22 89 - -
Lac10g2499 262 PANTHER WUSCHEL-RELATED HOMEOBOX 11 6 240 IPR044558 GO:0003700(InterPro)|GO:0048830(InterPro)
Lac10g2499 262 Pfam Homeodomain 22 82 IPR001356 GO:0003677(InterPro)
Lac10g2499 262 MobiDBLite consensus disorder prediction 1 25 - -
Lac10g2499 262 SMART HOX_1 20 87 IPR001356 GO:0003677(InterPro)
Lac10g2499 262 MobiDBLite consensus disorder prediction 1 24 - -
Lac10g2499 262 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2499 Lac-Chr10:38735206 Lac1g3374 Lac-Chr1:53346314 8.90E-25 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22806 PF00046 Homeodomain 6.90E-13 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2499 - - - 0.0