Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2530 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACTCCCACTCCCTCTTCCTCAAACCCTCCGCCGCCGCCGTCTCCGCCGCTCCGGCAGGCGCTCCCCCTCCTGAGGCTGAGCCCCAGCAGATCATCTCAAGATCAGGAGCAGCCCTCGGCCATGGAAATCGACGGCGACGACGAGGACGTTTCGGTGACTGTTGCACTCCACATAGGGCTTCCAAGCCCTAGTGCCTCAGAAATGGCGAGCCTTTTGGTTTCGAACAATGAAAATGAAGAAGATTTAGAATTGGAAGATCAAGATTTAGAGGTTGAAGATGAAGAAGTTGCAATTTCTGGATTCTCTTTGAGTAGTAGACTCAACAAAGGACAGTATTGGATCCCAACTCCTTCACAAATCCTCATTGGCCCTACTCAGTTCTCTTGTCCTGTTTGTTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGCGAGGTCCAGAGTCGTTAAGAGGCACACAGCCAACGGGCATGCTGAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTTCAAACTCACTACAAGCGCAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTGGCAAAGCCTTCGCCGTCAGAGGCGACTGGAGAACTCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTCAAGCACAAGAGATCCCTCAAAGACCACATCAAGGCCTTTGGGAATGGCCATGCTGCTTATAATAATAGTAGTATCACTAACGCCGATCATCATCATCGTCATCATCATCAACTTCACGGCTTTGATGAAGAGGACGAGCCTGCTTATTCTGAAGTCGAGCAAGATCATGATTGA 963 49.01 MDDPSTNFFTNLFKFNSPTPTPSSSNPPPPPSPPLRQALPLLRLSPSRSSQDQEQPSAMEIDGDDEDVSVTVALHIGLPSPSASEMASLLVSNNENEEDLELEDQDLEVEDEEVAISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSSITNADHHHRHHHQLHGFDEEDEPAYSEVEQDHD 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39175847 39177937 - Lag0026575.1 Lac10g2530 585061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2530 320 FunFam Zinc finger protein WIP2 198 280 - -
Lac10g2530 320 Gene3D Classic Zinc Finger 144 167 - -
Lac10g2530 320 PANTHER ZINC FINGER PROTEIN WIP2 17 305 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Lac10g2530 320 MobiDBLite consensus disorder prediction 43 57 - -
Lac10g2530 320 MobiDBLite consensus disorder prediction 293 320 - -
Lac10g2530 320 SMART c2h2final6 229 249 IPR013087 -
Lac10g2530 320 SMART c2h2final6 145 167 IPR013087 -
Lac10g2530 320 FunFam zinc finger protein WIP2-like 144 167 - -
Lac10g2530 320 SUPERFAMILY beta-beta-alpha zinc fingers 141 167 IPR036236 -
Lac10g2530 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Lac10g2530 320 MobiDBLite consensus disorder prediction 1 20 - -
Lac10g2530 320 MobiDBLite consensus disorder prediction 21 37 - -
Lac10g2530 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 249 IPR013087 -
Lac10g2530 320 Gene3D Classic Zinc Finger 206 287 - -
Lac10g2530 320 MobiDBLite consensus disorder prediction 299 320 - -
Lac10g2530 320 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Lac10g2530 320 MobiDBLite consensus disorder prediction 1 64 - -
Lac10g2530 320 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 228 252 - -
Lac10g2530 320 SUPERFAMILY beta-beta-alpha zinc fingers 211 249 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2530 Lac-Chr10:39175847 Lac9g2839 Lac-Chr9:46386195 3.30E-98 dispersed
Lac10g2530 Lac-Chr10:39175847 Lac4g2662 Lac-Chr4:45626190 2.80E-89 wgd
Lac10g2530 Lac-Chr10:39175847 Lac8g1295 Lac-Chr8:28218300 1.40E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22810 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2530 - - - 0.0