Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2536 ATGGAGATTAAAGTGGGGACTGTGGGTGGATCCAGTCCCATCGGGCGTCAATCGGATGATACTGGGCTTGAATCGCTTCAATTCTGTGAGGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACTGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTCCTCCACTCGCCGGATTCCGACGGTGGCGCCGCGGCGGCGGTTGTGAACGATGATTCCGTTCACCACCGTATCAAAGATGTGCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATCGAACGCGCCGCCAAGTTCTCGGTCTTGGCCGAAGAGCATTCGACGGAGACGACGAGTACAGTGCCGTTGAATTCGAGCGTCAATTTGGAGAAAGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCACTTGCAGACTTTAATCTCCGATCCGATGGTGGAGAACAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGAGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAAAGCAACGAAGATGCTGAAAAGCTTCCTTACGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAGCGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCTCTAGTCTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATCGATAGCATATTGGCTGGAGAAAACGAACCTGTACTCGAAAGCAACTTTCCGACCATGGTTACGCCATTGATGTGGCCAGAAATCCCGCTCAGTGGAAACAGACAACAATATCAACCGCAATGGCATTTCGATGCAGCAGTTAACCAGCAAGCCTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1122 49.47 MEIKVGTVGGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSDGGAAAAVVNDDSVHHRIKDVPKPYFSAFNCNLTFPTNSALIERAAKFSVLAEEHSTETTSTVPLNSSVNLEKVKNEPTTETDSNPNHLQTLISDPMVENNTNQRSAKRKEREKKGKGSSKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAGENEPVLESNFPTMVTPLMWPEIPLSGNRQQYQPQWHFDAAVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39302056 39306419 - Lag0026581.1 Lac10g2536 585067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2536 373 Coils Coil 251 271 - -
Lac10g2536 373 MobiDBLite consensus disorder prediction 184 220 - -
Lac10g2536 373 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983(InterPro)
Lac10g2536 373 MobiDBLite consensus disorder prediction 120 220 - -
Lac10g2536 373 CDD bHLH_AtBPE_like 201 286 - -
Lac10g2536 373 FunFam transcription factor bHLH48-like isoform X1 208 280 - -
Lac10g2536 373 SMART finulus 217 267 IPR011598 GO:0046983(InterPro)
Lac10g2536 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 280 IPR036638 GO:0046983(InterPro)
Lac10g2536 373 MobiDBLite consensus disorder prediction 120 169 - -
Lac10g2536 373 Gene3D - 208 281 IPR036638 GO:0046983(InterPro)
Lac10g2536 373 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 105 336 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac10g2536 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2536 Lac-Chr10:39302056 Lac3g3057 Lac-Chr3:48902732 2.40E-52 dispersed
Lac10g2536 Lac-Chr10:39302056 Lac4g1456 Lac-Chr4:33028543 4.60E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22811 PF00010 HLH 1.40E-05 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2536 - - - 0.0