Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g2543 | ATGGCTGATTTCTCAGACTACCTTCTTCTTCTCTCTTTCTTGCTAGCATCCTTCCTCTTCATCCAAGCTATCTGCACTCGAACCCGACCCGACAAGCCTCGCCTTCCACCGAGCCCACCGTTGTGGCCGGTGGTCGGCCACCTCCACCTCCTTGGTCGGATCCCTCACCAAGCCCTTCACAAATTGTCATGTCAATATGGACCATTAATACATCTCTTCTTTGGCTCTAAGCCTTGTGTTATTGTCTCCTCGCCAGAAATGGCTAAACATTTCCTCAAAACAAATGAATCCTCCTTTTTGAACCGACCCATTAGGCTCAACATAAACTATCTCACTTATGGCTCTGCGGACTTCACTTTTGCACCCTATGGACCCTATTGGAAGTTCTTGAAAAAGCTTTGCATGACGGAGCTCCTCGGCGCCCGGACGCTCGACCTCCACCGCCCGGTGAGGGACGTGGAGATGAGGCTGTTCGTGCAGCAGATTCATGAACGAGCTGTCCTTGGGGCGGCAGTCGATGTTGGAGCTGAACTTTCGAGGTTGATGAATAACATAATATCGAGGATGACGTTGAGGAGGAGGTGCTCGGAGGAGGAAGGCGGAGCGGAAGAGGTGGGGAAGCTGGTGGGGGAGATGTGCGAGCTCGCCGGAGAACTTAACGTCGCCGACATGATTTGGTTCTGCAAGAGATTGGATTTACAAGGGTTTGGAAGAAAAGTTAGAGATGTGAGGAAGAGGTATGATGCTATGATGGAGAAGATAATAAAGGAACATGAAGAAGAGAGGAAGAGGAAGAAGGAAGATGGTGAAGATGATGGAGTTAAGGATTTGCTTGATATTTTACTTGACATTTATGAAGATGAAAGCTCACAAATCAAACTCACAAGAGAGAACATCAAGGCTTTTGTTATGAACATATTCGGCGCCGGAACTGAAACATCAGCGGCGGCGACAGAGTGGGCATTAGCCGAGCTAATCAACAACCCGTCCGCCATGGCCAAAGCAACTCAAGAACTCGACTCCGTCATCGGAAAAACCCGCCTCCTTCACGAATCCGATCTCCCCAACCTCCCCTATCTCCAATCCGTCGTCAAAGAAACCCTCCGCCTCCACCCGACGGCGCCGCTCATCGTTCGTGAGGCCACCGAGCCCTGCACCGTCGCCGGATACCACATTCCGGCCAGCACCCGCCTCCTCGTCAACGTCTGGGCCATCGCCCGCGACCCGGCCCACTGGCCCGACCCGCTCCAGTTCCGGCCGGAGAGATTCTTGAGCCGCCCGGGATCCGATCTGCAGAGCTTTGATCTCATGCCGTTTGGGAGCGGCCGCCGGAGCTGCCCGGGCGCCGCCATGGCTCTGCTGGCGGTGCCGGCAGTGCTCGGGAGGTTGATTCAATGCTTTGAGTGGAAGGTTGATGGCGGCGGTGGTGGCGTTGATATGGAAGAAGGGCCTGGAATTTCTCTCCGGCGAGCTCGTCCTTTGGTTTTAGTTCCTGTGCGTAGGCTCCATCCTTTTCCTTGTATTTAG | 1527 | 53.63 | MADFSDYLLLLSFLLASFLFIQAICTRTRPDKPRLPPSPPLWPVVGHLHLLGRIPHQALHKLSCQYGPLIHLFFGSKPCVIVSSPEMAKHFLKTNESSFLNRPIRLNINYLTYGSADFTFAPYGPYWKFLKKLCMTELLGARTLDLHRPVRDVEMRLFVQQIHERAVLGAAVDVGAELSRLMNNIISRMTLRRRCSEEEGGAEEVGKLVGEMCELAGELNVADMIWFCKRLDLQGFGRKVRDVRKRYDAMMEKIIKEHEEERKRKKEDGEDDGVKDLLDILLDIYEDESSQIKLTRENIKAFVMNIFGAGTETSAAATEWALAELINNPSAMAKATQELDSVIGKTRLLHESDLPNLPYLQSVVKETLRLHPTAPLIVREATEPCTVAGYHIPASTRLLVNVWAIARDPAHWPDPLQFRPERFLSRPGSDLQSFDLMPFGSGRRSCPGAAMALLAVPAVLGRLIQCFEWKVDGGGGGVDMEEGPGISLRRARPLVLVPVRRLHPFPCI | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 39421749 | 39424524 | - | Lag0026588.1 | Lac10g2543 | 585074 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g2543 | 508 | Pfam | Cytochrome P450 | 36 | 492 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | FunFam | Cytochrome P450 family protein | 27 | 496 | - | - | |
| Lac10g2543 | 508 | SUPERFAMILY | Cytochrome P450 | 36 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 439 | 448 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac10g2543 | 508 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 13 | 501 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Lac10g2543 | 508 | Gene3D | Cytochrome P450 | 21 | 497 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 63 | 82 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 446 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 401 | 425 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | E-class P450 group I signature | 436 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | P450 superfamily signature | 446 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g2543 | 508 | PRINTS | P450 superfamily signature | 437 | 446 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2543 | Lac-Chr10:39421749 | Lac1g1163 | Lac-Chr1:30045091 | 8.70E-178 | dispersed | |
| Lac10g2543 | Lac-Chr10:39421749 | Lac10g2545 | Lac-Chr10:39435499 | 3.50E-52 | proximal | |
| Lac10g2543 | Lac-Chr10:39421749 | Lac11g2228 | Lac-Chr11:38317043 | 2.10E-59 | wgd | |
| Lac10g2543 | Lac-Chr10:39421749 | Lac4g2676 | Lac-Chr4:45708659 | 1.40E-103 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g2543 | K24188 | - | csv:101205411 | 764.607 |