Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2550 ATGGCAGGCACCGACACGACATCGACAACGATGCAGTGGGCCATGGGAGAGCTCCTAAATTGTCCAGAAGCGTTCCAAAAGCTAAGAGCAGAGATAATTTTAGTGGTTGGAAACAAAAAGTTAGTACAAGAATCCGACCTCCCCAACCTCCCATATCTCTGGGCAGTGATCAGCGAAACCCTCCGCCTGCACCCGCCGGCGCCGATCATCATCAGAGAATGTTTAGAAGATTGCAACATCAACGGCTCGTTGATCAAGGCCAAAACCCGTGTCTTGATCAATGCCTACGCCATCATGAGAGACCCAGAATCCTGGTCGGAGCCCGACAGGTTCTTGCCGGAGAGGTTCCTGGAAGGGTCGTCGGAGAGGCTTGGCGACCACCGGATGGAGATGAAGGGACAAAATTTCAAGTTCATTCCATTTGGGAGTGGGAAGAGAGGTTGCCCTAGATCTTCCCTTGCCTTGATGGTTCTTCCTTGTGCAATTGCGGTCATGGTGCAACGGTTTGACTGGAAGATGAGCGGTGACGGTGGCGGTGTTGATTTGAGACCTGGGTCGGGATTTTCTGCAGAGATGGCAACGCCGCTCATCTGTTATGCAGACAACATTGATGGAAGTGGTTAA 624 51.76 MAGTDTTSTTMQWAMGELLNCPEAFQKLRAEIILVVGNKKLVQESDLPNLPYLWAVISETLRLHPPAPIIIRECLEDCNINGSLIKAKTRVLINAYAIMRDPESWSEPDRFLPERFLEGSSERLGDHRMEMKGQNFKFIPFGSGKRGCPRSSLALMVLPCAIAVMVQRFDWKMSGDGGGVDLRPGSGFSAEMATPLICYADNIDGSG 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39480771 39481394 - Lag0026595.1 Lac10g2550 585081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2550 207 Pfam Cytochrome P450 1 177 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 SUPERFAMILY Cytochrome P450 1 199 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS P450 superfamily signature 139 148 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS P450 superfamily signature 2 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS P450 superfamily signature 55 66 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 200 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
Lac10g2550 207 Gene3D Cytochrome P450 1 190 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS E-class P450 group I signature 54 72 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS E-class P450 group I signature 138 148 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS E-class P450 group I signature 94 118 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS E-class P450 group I signature 11 37 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g2550 207 PRINTS E-class P450 group I signature 148 171 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2550 Lac-Chr10:39480771 Lac11g0531 Lac-Chr11:5494181 4.60E-61 dispersed
Lac10g2544 Lac-Chr10:39428038 Lac10g2550 Lac-Chr10:39480771 1.70E-37 proximal
Lac10g2550 Lac-Chr10:39480771 Lac2g0253 Lac-Chr2:1909371 4.70E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2550 - - - 0.0