Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2555 | ATGGCTTCCTCCAATATTAAAAGCAGCTCGTCCATCAGCCAACAAGCAAACCAACAAGAAGAAGAAAAACAACAACAACAACATCATCATCAACTTTTGCAAACTCCAAACTTTGTCATCTCCAAAAATTCCTCATTATTCAACTTCCAAAACAACAATTTTCATGATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCCTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTTTATCTTGATGGACAAGAACCCTCAACAACTACTACTACTCAAGATCAAAGACAGAGCTCGGGGATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCGTCGCCAACAAAAGCAAACACAGCATTGATGAAGCATGGTGATTCAAAGATCAAAGCATCAGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCTGTGGAGCCACTGCATCTGGACCAGCCCCAACTCCAACTACAACTACAACAACCGAACCTCATGCCAAACCTCCAAAACGTGAGCCTAACAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACCCTCAGAAGGCTGGCTCAGAATCGAGAGGCTGCCAGAAAAAGCAGGCTGAGAAAAAAGGCTTATGTTCAGCAGTTGGAGTTGAGTAGGATTAAGCTCACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGAATGTTTCTGGGTGGAGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCTGCTGGCCTCCATAACCTCAGCTCTGACGCTGCGGTGTTCGACATCGAGTACGGGCGGTGGCAAGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCACCTACCGGAGAACGAGCTCCGGCTGTTCGTCGACAATTGTTTAGCCCATTACGACGAGATTCTGAACTTGAAGATGATGGTGGCGAAGTCGGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGGTGCTTCATGTGGATGGGAGATTTTAGGCCATCTGAGCTCATTAAGATAATAATGGGTCAAGTAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCAACACAAGAGACTGAGGAGGCATTGTCTCAAGGGCTTGAGGCCCTTAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAACTCTCTACCCTTGAAGGCTTTGTAAGACAGGCAGACAATTTGAGACATCAAACGTTTCACCGATTACATCAGATGTTGACAACTCGTCAAGCCGCTAGGTGTTTGCTAGCTATCGCAGAGTATTTTCATCGACTTCGAGCTCTTAGCTCCTTGTGGTTGGCTCGACCCAGGCAGGATTGA | 1518 | 48.02 | MASSNIKSSSSISQQANQQEEEKQQQQHHHQLLQTPNFVISKNSSLFNFQNNNFHDHHHHQLPFSMNLPSISPNFISKDGGGDDLGELDQALFLYLDGQEPSTTTTTQDQRQSSGMRPPTLNIFPSQPMHVDPSPTKANTALMKHGDSKIKASEPSKELANQRSCGATASGPAPTPTTTTTTEPHAKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGAAILGADQGLPAGLHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEILNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQVEPLTEHQILNICGLQQSTQETEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTFHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 39547290 | 39555709 | - | Lag0026600.1 | Lac10g2555 | 585086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2555 | 505 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lac10g2555 | 505 | MobiDBLite | consensus disorder prediction | 97 | 134 | - | - | |
Lac10g2555 | 505 | MobiDBLite | consensus disorder prediction | 157 | 184 | - | - | |
Lac10g2555 | 505 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lac10g2555 | 505 | FunFam | BZIP family transcription factor | 212 | 261 | - | - | |
Lac10g2555 | 505 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 211 | 255 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2555 | 505 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 216 | 231 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2555 | 505 | MobiDBLite | consensus disorder prediction | 97 | 216 | - | - | |
Lac10g2555 | 505 | Pfam | Seed dormancy control | 305 | 379 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac10g2555 | 505 | SUPERFAMILY | Leucine zipper domain | 213 | 255 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2555 | 505 | Coils | Coil | 232 | 259 | - | - | |
Lac10g2555 | 505 | Gene3D | - | 212 | 262 | - | - | |
Lac10g2555 | 505 | ProSiteProfiles | DOG1 domain profile. | 287 | 501 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac10g2555 | 505 | SMART | brlzneu | 209 | 272 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2555 | 505 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 120 | 504 | - | - | |
Lac10g2555 | 505 | Pfam | bZIP transcription factor | 213 | 249 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2555 | 505 | CDD | bZIP_HBP1b-like | 213 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2555 | Lac-Chr10:39547290 | Lac6g0834 | Lac-Chr6:7189251 | 6.60E-93 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22813 | PF14144 | DOG1 | 1.50E-31 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2555 | K14431 | - | csv:101204923 | 801.971 |