Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2555 ATGGCTTCCTCCAATATTAAAAGCAGCTCGTCCATCAGCCAACAAGCAAACCAACAAGAAGAAGAAAAACAACAACAACAACATCATCATCAACTTTTGCAAACTCCAAACTTTGTCATCTCCAAAAATTCCTCATTATTCAACTTCCAAAACAACAATTTTCATGATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCCTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTTTATCTTGATGGACAAGAACCCTCAACAACTACTACTACTCAAGATCAAAGACAGAGCTCGGGGATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCGTCGCCAACAAAAGCAAACACAGCATTGATGAAGCATGGTGATTCAAAGATCAAAGCATCAGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCTGTGGAGCCACTGCATCTGGACCAGCCCCAACTCCAACTACAACTACAACAACCGAACCTCATGCCAAACCTCCAAAACGTGAGCCTAACAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACCCTCAGAAGGCTGGCTCAGAATCGAGAGGCTGCCAGAAAAAGCAGGCTGAGAAAAAAGGCTTATGTTCAGCAGTTGGAGTTGAGTAGGATTAAGCTCACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGAATGTTTCTGGGTGGAGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCTGCTGGCCTCCATAACCTCAGCTCTGACGCTGCGGTGTTCGACATCGAGTACGGGCGGTGGCAAGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCACCTACCGGAGAACGAGCTCCGGCTGTTCGTCGACAATTGTTTAGCCCATTACGACGAGATTCTGAACTTGAAGATGATGGTGGCGAAGTCGGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGGTGCTTCATGTGGATGGGAGATTTTAGGCCATCTGAGCTCATTAAGATAATAATGGGTCAAGTAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCAACACAAGAGACTGAGGAGGCATTGTCTCAAGGGCTTGAGGCCCTTAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAACTCTCTACCCTTGAAGGCTTTGTAAGACAGGCAGACAATTTGAGACATCAAACGTTTCACCGATTACATCAGATGTTGACAACTCGTCAAGCCGCTAGGTGTTTGCTAGCTATCGCAGAGTATTTTCATCGACTTCGAGCTCTTAGCTCCTTGTGGTTGGCTCGACCCAGGCAGGATTGA 1518 48.02 MASSNIKSSSSISQQANQQEEEKQQQQHHHQLLQTPNFVISKNSSLFNFQNNNFHDHHHHQLPFSMNLPSISPNFISKDGGGDDLGELDQALFLYLDGQEPSTTTTTQDQRQSSGMRPPTLNIFPSQPMHVDPSPTKANTALMKHGDSKIKASEPSKELANQRSCGATASGPAPTPTTTTTTEPHAKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGAAILGADQGLPAGLHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEILNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQVEPLTEHQILNICGLQQSTQETEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTFHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39547290 39555709 - Lag0026600.1 Lac10g2555 585086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2555 505 MobiDBLite consensus disorder prediction 1 21 - -
Lac10g2555 505 MobiDBLite consensus disorder prediction 97 134 - -
Lac10g2555 505 MobiDBLite consensus disorder prediction 157 184 - -
Lac10g2555 505 MobiDBLite consensus disorder prediction 1 31 - -
Lac10g2555 505 FunFam BZIP family transcription factor 212 261 - -
Lac10g2555 505 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 211 255 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2555 505 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 216 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2555 505 MobiDBLite consensus disorder prediction 97 216 - -
Lac10g2555 505 Pfam Seed dormancy control 305 379 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac10g2555 505 SUPERFAMILY Leucine zipper domain 213 255 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2555 505 Coils Coil 232 259 - -
Lac10g2555 505 Gene3D - 212 262 - -
Lac10g2555 505 ProSiteProfiles DOG1 domain profile. 287 501 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac10g2555 505 SMART brlzneu 209 272 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2555 505 PANTHER TRANSCRIPTION FACTOR TGA9 120 504 - -
Lac10g2555 505 Pfam bZIP transcription factor 213 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2555 505 CDD bZIP_HBP1b-like 213 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2555 Lac-Chr10:39547290 Lac6g0834 Lac-Chr6:7189251 6.60E-93 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22813 PF14144 DOG1 1.50E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2555 K14431 - csv:101204923 801.971