Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2573 ATGTACTTGCTTAACCCATGTGACATGTACAACGAGCAAGAGAACGATGATGATGTCCATGAAGACATAGTCGAGAAACTCATCAATTGGGCATCCTCTTCCTGGGTTTCACCGACTTGTGTCCTCCAACATGATGATAACACGATGACGACTACAAGCGAAGAATCACGAGAAGGGAATTGTTTTTGGTTTGACGGTAGCATTGTTCTTGACATTTTGCTTGTGTTCGATTCTTTGTTGTTTGTTCCATGGAAACAGAGAACCATCAAACTGGACGTGGTTTTTTTTGGAGAAATGCTCCAGCAGTGTCTGTTTACGTATCTTAGCGTTGTTTTCTATTCGATGATTCTCACTTCTCTGGCTCGGGCGTTCACTAATCCGCCGGATGTTGCAGCTCTTCAGGACCTGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGTGCAAACATGGACCGGAGTGTCTTGCTCCGGGTCATCTGTAATATACCTTAAACTCCACGGACTGAACCTCACTGGGAATCTTGGAGGGCAGCTCAACAACCTCAAGAATTTGAAACAACTGGATGTTAGTTCTAATAGACTTACGGGTGAAATTCCTCAAAACTTGCCTCCTAATGCGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTACCTTACATGGGAAATCTCCGACATTTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTGTCATATAATGACTTCACAGGAGATTTGCCAAGTTCATTCGGTTCCCTGACGAATATCACTAGACTGTTCTTGCAGAACAACAAATTTACTGGATCAGTTGCCTACTTGTCTCACCTTCCACTAATTGACTTGAACATCCAAGACAATTCTTTTAGTGGCATTATTCCAGAGAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAGGTTCCGTGCCGAAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCTGTGGTGCAAAACATCAGTGGTCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGTGGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCTGGTGGAGTAGTTCTCCTGGTTGGCGGGTTAACACTAGTTGTAACCTTTGCAGCTCTTTTTGTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTAGCAATATGTTTTCCCGTTCTCTTCCTCTGGGCAAAGCCGAAGATGGTTCGTCTACTGCACCCGAAGAAAGTTCACAAAGCTTGCCCCTGAGTTCTCTACTCATGGGCGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACGGAAAAAGTTTCTGGGAAAAAAGGTTTCTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATGTACACTTTGGCAAAGCTTCAATCCACTACAAACAACTTTAGCCAAGAAAATCTTCTTGGAGAGGGATCGCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAACACGGGGGCACTCTCTTTTACAGAAGAAGAACAGTTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATAGTTACGCTGCTTGGGTATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGGCGCTTTACACTGTGAAGCATATATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACCAATAGTGTTAAAACGAAGGCTTCTGAGATTGCCAGTGGCAACAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGCTGCTTTTGGAGCTCGTCACAGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAGCAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCCAAGGCCCTCTCTCGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTAACAAATCTTCAGAGAAAGATGGAGATGGCGAAACGTGCTGGAGCAGAAGGAACTGAAATGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGTTTCGTAAGTTCACCAACATACAGCTACTCTTCCACCCCAGTTTAG 2511 43.37 MYLLNPCDMYNEQENDDDVHEDIVEKLINWASSSWVSPTCVLQHDDNTMTTTSEESREGNCFWFDGSIVLDILLVFDSLLFVPWKQRTIKLDVVFFGEMLQQCLFTYLSVVFYSMILTSLARAFTNPPDVAALQDLYSALNYPPELIGWRKEGGDPCVQTWTGVSCSGSSVIYLKLHGLNLTGNLGGQLNNLKNLKQLDVSSNRLTGEIPQNLPPNATHINMAFNHLSQNIPHTLPYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSHLPLIDLNIQDNSFSGIIPENFRTIPNLWIGGNRFRAEVNSPPWDFPLEKAPVVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGVVLLVGGLTLVVTFAALFVVFAMKKVHEKKINLKISNMFSRSLPLGKAEDGSSTAPEESSQSLPLSSLLMGGPRPIPLLNHTRTEKVSGKKGFSKRCRLPVRTKMYTLAKLQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINTGALSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHLLGYEYVRNLSLDGALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVTNSVKTKASEIASGNRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQPVKEFRPPMSEIVEHLTNLQRKMEMAKRAGAEGTEMDPFEKSFRSTNTGFVSSPTYSYSSTPV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39692027 39698608 - Lag0026618.1 Lac10g2573 585104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2573 836 Gene3D Transferase(Phosphotransferase) domain 1 592 812 - -
Lac10g2573 836 Coils Coil 782 802 - -
Lac10g2573 836 Pfam Leucine Rich Repeat 194 213 IPR001611 GO:0005515(InterPro)
Lac10g2573 836 Pfam Leucine Rich Repeat 311 330 IPR001611 GO:0005515(InterPro)
Lac10g2573 836 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515(InterPro)
Lac10g2573 836 Pfam Leucine rich repeat N-terminal domain 127 167 IPR013210 -
Lac10g2573 836 MobiDBLite consensus disorder prediction 441 461 - -
Lac10g2573 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 125 793 IPR046959 -
Lac10g2573 836 SMART LRR_typ_2 262 285 IPR003591 -
Lac10g2573 836 SMART LRR_typ_2 192 216 IPR003591 -
Lac10g2573 836 SMART LRR_typ_2 286 309 IPR003591 -
Lac10g2573 836 SMART LRR_typ_2 238 261 IPR003591 -
Lac10g2573 836 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 126 353 - -
Lac10g2573 836 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Lac10g2573 836 Gene3D Ribonuclease Inhibitor 126 357 IPR032675 -
Lac10g2573 836 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 478 590 - -
Lac10g2573 836 SUPERFAMILY Protein kinase-like (PK-like) 491 790 IPR011009 -
Lac10g2573 836 Pfam Protein kinase domain 514 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2573 836 FunFam Leucine-rich repeat receptor-like protein kinase 591 800 - -
Lac10g2573 836 SUPERFAMILY L domain-like 125 336 - -
Lac10g2573 836 ProSiteProfiles Protein kinase domain profile. 513 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2573 Lac-Chr10:39692027 Lac12g2502 Lac-Chr12:42005360 4.10E-108 dispersed
Lac10g2568 Lac-Chr10:39670069 Lac10g2573 Lac-Chr10:39692027 4.90E-211 proximal
Lac10g2573 Lac-Chr10:39692027 Lac3g1859 Lac-Chr3:20715495 1.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85685 PF07714 PK_Tyr_Ser-Thr 2.10E-34 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2573 - - - 0.0