Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2573 ATGTACTTGCTTAACCCATGTGACATGTACAACGAGCAAGAGAACGATGATGATGTCCATGAAGACATAGTCGAGAAACTCATCAATTGGGCATCCTCTTCCTGGGTTTCACCGACTTGTGTCCTCCAACATGATGATAACACGATGACGACTACAAGCGAAGAATCACGAGAAGGGAATTGTTTTTGGTTTGACGGTAGCATTGTTCTTGACATTTTGCTTGTGTTCGATTCTTTGTTGTTTGTTCCATGGAAACAGAGAACCATCAAACTGGACGTGGTTTTTTTTGGAGAAATGCTCCAGCAGTGTCTGTTTACGTATCTTAGCGTTGTTTTCTATTCGATGATTCTCACTTCTCTGGCTCGGGCGTTCACTAATCCGCCGGATGTTGCAGCTCTTCAGGACCTGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGTGCAAACATGGACCGGAGTGTCTTGCTCCGGGTCATCTGTAATATACCTTAAACTCCACGGACTGAACCTCACTGGGAATCTTGGAGGGCAGCTCAACAACCTCAAGAATTTGAAACAACTGGATGTTAGTTCTAATAGACTTACGGGTGAAATTCCTCAAAACTTGCCTCCTAATGCGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTACCTTACATGGGAAATCTCCGACATTTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTGTCATATAATGACTTCACAGGAGATTTGCCAAGTTCATTCGGTTCCCTGACGAATATCACTAGACTGTTCTTGCAGAACAACAAATTTACTGGATCAGTTGCCTACTTGTCTCACCTTCCACTAATTGACTTGAACATCCAAGACAATTCTTTTAGTGGCATTATTCCAGAGAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAGGTTCCGTGCCGAAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCTGTGGTGCAAAACATCAGTGGTCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGTGGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCTGGTGGAGTAGTTCTCCTGGTTGGCGGGTTAACACTAGTTGTAACCTTTGCAGCTCTTTTTGTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTAGCAATATGTTTTCCCGTTCTCTTCCTCTGGGCAAAGCCGAAGATGGTTCGTCTACTGCACCCGAAGAAAGTTCACAAAGCTTGCCCCTGAGTTCTCTACTCATGGGCGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACGGAAAAAGTTTCTGGGAAAAAAGGTTTCTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATGTACACTTTGGCAAAGCTTCAATCCACTACAAACAACTTTAGCCAAGAAAATCTTCTTGGAGAGGGATCGCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAACACGGGGGCACTCTCTTTTACAGAAGAAGAACAGTTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATAGTTACGCTGCTTGGGTATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGGCGCTTTACACTGTGAAGCATATATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACCAATAGTGTTAAAACGAAGGCTTCTGAGATTGCCAGTGGCAACAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGCTGCTTTTGGAGCTCGTCACAGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAGCAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCCAAGGCCCTCTCTCGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTAACAAATCTTCAGAGAAAGATGGAGATGGCGAAACGTGCTGGAGCAGAAGGAACTGAAATGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGTTTCGTAAGTTCACCAACATACAGCTACTCTTCCACCCCAGTTTAG 2511 43.37 MYLLNPCDMYNEQENDDDVHEDIVEKLINWASSSWVSPTCVLQHDDNTMTTTSEESREGNCFWFDGSIVLDILLVFDSLLFVPWKQRTIKLDVVFFGEMLQQCLFTYLSVVFYSMILTSLARAFTNPPDVAALQDLYSALNYPPELIGWRKEGGDPCVQTWTGVSCSGSSVIYLKLHGLNLTGNLGGQLNNLKNLKQLDVSSNRLTGEIPQNLPPNATHINMAFNHLSQNIPHTLPYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSHLPLIDLNIQDNSFSGIIPENFRTIPNLWIGGNRFRAEVNSPPWDFPLEKAPVVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGVVLLVGGLTLVVTFAALFVVFAMKKVHEKKINLKISNMFSRSLPLGKAEDGSSTAPEESSQSLPLSSLLMGGPRPIPLLNHTRTEKVSGKKGFSKRCRLPVRTKMYTLAKLQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINTGALSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHLLGYEYVRNLSLDGALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVTNSVKTKASEIASGNRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQPVKEFRPPMSEIVEHLTNLQRKMEMAKRAGAEGTEMDPFEKSFRSTNTGFVSSPTYSYSSTPV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39692027 39698608 - Lag0026618.1 Lac10g2573 585104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2573 836 Gene3D Transferase(Phosphotransferase) domain 1 592 812 - -
Lac10g2573 836 Coils Coil 782 802 - -
Lac10g2573 836 Pfam Leucine Rich Repeat 194 213 IPR001611 GO:0005515(InterPro)
Lac10g2573 836 Pfam Leucine Rich Repeat 311 330 IPR001611 GO:0005515(InterPro)
Lac10g2573 836 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515(InterPro)
Lac10g2573 836 Pfam Leucine rich repeat N-terminal domain 127 167 IPR013210 -
Lac10g2573 836 MobiDBLite consensus disorder prediction 441 461 - -
Lac10g2573 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 125 793 IPR046959 -
Lac10g2573 836 SMART LRR_typ_2 262 285 IPR003591 -
Lac10g2573 836 SMART LRR_typ_2 192 216 IPR003591 -
Lac10g2573 836 SMART LRR_typ_2 286 309 IPR003591 -
Lac10g2573 836 SMART LRR_typ_2 238 261 IPR003591 -
Lac10g2573 836 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 126 353 - -
Lac10g2573 836 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Lac10g2573 836 Gene3D Ribonuclease Inhibitor 126 357 IPR032675 -
Lac10g2573 836 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 478 590 - -
Lac10g2573 836 SUPERFAMILY Protein kinase-like (PK-like) 491 790 IPR011009 -
Lac10g2573 836 Pfam Protein kinase domain 514 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2573 836 FunFam Leucine-rich repeat receptor-like protein kinase 591 800 - -
Lac10g2573 836 SUPERFAMILY L domain-like 125 336 - -
Lac10g2573 836 ProSiteProfiles Protein kinase domain profile. 513 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2573 Lac-Chr10:39692027 Lac12g2502 Lac-Chr12:42005360 4.10E-108 dispersed
Lac10g2568 Lac-Chr10:39670069 Lac10g2573 Lac-Chr10:39692027 4.90E-211 proximal
Lac10g2573 Lac-Chr10:39692027 Lac3g1859 Lac-Chr3:20715495 1.40E-55 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac10g1387 . 390 683 Strubbelig Receptor Gene Family AT1G11130 53.7 3.1e-85 313.9
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac12g2502 . 255 973 Strubbelig Receptor Gene Family AT1G53730 55.1 1.2e-201 700.7
Lac4g3072 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.6 2.3e-192 669.8
Lac8g1144 . 5 682 Strubbelig Receptor Gene Family AT1G53730 51.4 4.0e-152 536.2
Lac12g2502 . 265 977 Strubbelig Receptor Gene Family AT3G14350 51.0 1.6e-182 637.1
Lac4g3072 . 10 696 Strubbelig Receptor Gene Family AT3G14350 56.4 9.7e-172 601.3
Lac10g1387 . 338 713 Strubbelig Receptor Gene Family AT4G22130 81.9 2.6e-175 612.8
Lac12g2502 . 661 989 Strubbelig Receptor Gene Family AT4G22130 63.4 1.2e-119 427.9
Lac4g3072 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.8 3.0e-118 423.3
Lac12g0685 . 474 769 Strubbelig Receptor Gene Family AT4G22130 62.0 1.5e-106 384.4
Lac8g1144 . 346 696 Strubbelig Receptor Gene Family AT4G22130 52.5 1.4e-99 361.3
Lac10g2573 . 485 807 Strubbelig Receptor Gene Family AT4G22130 52.6 8.7e-94 342.0
Lac1g3304 . 610 877 Strubbelig Receptor Gene Family AT4G22130 60.0 1.7e-89 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85685 PF07714 PK_Tyr_Ser-Thr 2.10E-34 CL0016 Lac PK