Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2623 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGACGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGCTCATTAGAGGACTCGTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTAATGGAGAGTTTTCTTTCGCTGTAGTTCAGGCGAATGAGATAATTGAGGATAATAGTCAGGTTGAGACTGGCCGCGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTCATCTGTGATCATCTTTTCAGGAATCTGATGAGGCTTGCTCAAGAAAATGGAACAATAACAGAAGATATCATCAGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAACCTACAGTTGCAGCCATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATTGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCAGATGACTCACATATCGTTGTTATGAAGCATGGAGTATGGCGTATAAAAGGCATAATTCAGGTTTCCAGATCGATAGGTGATGCATATTTGAAAAGGCCAGAGTTCTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACAGCCGAACCATCGATAAGTACAAGAGTTCTACAACCCAATGACAAATTTCTCATATTTGCATCTGATGGCCTTTGGGAGCATCTGTCGAATCAACAAGCTGTCGAGATTGTGTATAATAACCCACGAGCAGGAATTGCAAAAAAACTTGTCAAAACAGCACTAACTGAGGCCGCAAGGAAGAGGGAGATGAGATATGATGATCTCAAGAAGCTCGAGAAGGGCATACGACGGTTCTTTCACGACGATATCACAGTTGTTGTCATCTTTCTGGACCATGAGTTGCAAGGGAAGAAGGCACATGTACCAGAATTATCCGTTCGTGGGTTCACTGACACCGTTGGACCGTCGAATTTCAACGTTCTTCGAGGCATCGATGAGAATGGAAGGTCTGTTGGCTGA 1173 45.44 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSNGEFSFAVVQANEIIEDNSQVETGRDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGTITEDIIRSAFSATEEGFLTLVRRSWGIKPTVAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLAEPLRRPVLTAEPSISTRVLQPNDKFLIFASDGLWEHLSNQQAVEIVYNNPRAGIAKKLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKAHVPELSVRGFTDTVGPSNFNVLRGIDENGRSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40361221 40364244 + Lag0026668.1 Lac10g2623 585154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2623 390 Pfam Protein phosphatase 2C 68 317 IPR001932 -
Lac10g2623 390 SMART PP2C_4 41 346 IPR001932 -
Lac10g2623 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Lac10g2623 390 CDD PP2Cc 50 348 IPR001932 -
Lac10g2623 390 Gene3D - 29 358 IPR036457 -
Lac10g2623 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Lac10g2623 390 SUPERFAMILY PP2C-like 55 349 IPR036457 -
Lac10g2623 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Lac10g2623 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2623 Lac-Chr10:40361221 Lac9g1843 Lac-Chr9:38204733 5.40E-119 dispersed
Lac10g2623 Lac-Chr10:40361221 Lac1g3042 Lac-Chr1:51058272 4.10E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2623 K01102 - csv:101222146 748.814