Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2624 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGCGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCAGTATTCCCCAGCATCGTTGGTCGTCCCAGGCACACTGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAGGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGTAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACAGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCCGCCATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGAATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACTGTTCCAATCTACGAAGGCTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCTCCGCGGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTTCGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGGCAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCTATCATGAAGTGTGATGTCGACATTAGAAAGGATCTCTATGGCAATATTGTCCTCAGTGGTGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCTCCACCTGAAAGAAAGTACAGTGTCTGGATCGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCCAAGGCGGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 47.44 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40365596 40367767 - Lag0026669.1 Lac10g2624 585155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2624 377 FunFam Major actin 260 340 - -
Lac10g2624 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lac10g2624 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lac10g2624 377 PRINTS Actin signature 51 62 IPR004000 -
Lac10g2624 377 PRINTS Actin signature 238 254 IPR004000 -
Lac10g2624 377 PRINTS Actin signature 63 85 IPR004000 -
Lac10g2624 377 PRINTS Actin signature 142 161 IPR004000 -
Lac10g2624 377 PRINTS Actin signature 28 37 IPR004000 -
Lac10g2624 377 PRINTS Actin signature 117 130 IPR004000 -
Lac10g2624 377 FunFam Putative actin-related protein 5 341 369 - -
Lac10g2624 377 Pfam Actin 5 377 IPR004000 -
Lac10g2624 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lac10g2624 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lac10g2624 377 FunFam Actin, muscle 182 273 - -
Lac10g2624 377 Gene3D - 10 371 - -
Lac10g2624 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Lac10g2624 377 SMART actin_3 7 377 IPR004000 -
Lac10g2624 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lac10g2624 377 Gene3D - 140 340 - -
Lac10g2624 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lac10g2624 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Lac10g2624 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2624 K10355 - - mdm:103443130 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2624 Lac-Chr10:40365596 Lac12g0288 Lac-Chr12:3204737 1.30E-210 dispersed
Lac10g2624 Lac-Chr10:40365596 Lac1g2407 Lac-Chr1:45486567 7.30E-214 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 9.6e-214 740.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT2G37620 95.5 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 3.1e-212 734.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT2G37620 93.1 1.5e-203 706.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-199 693.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT2G37620 86.7 5.1e-199 691.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT2G37620 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT2G37620 95.0 2.0e-131 466.5
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-213 739.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-210 729.6
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G59370 94.4 4.9e-210 727.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G59370 94.2 4.8e-205 711.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-198 689.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G59370 87.2 3.3e-198 688.3
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G59370 87.5 2.0e-155 546.2
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT5G59370 94.2 1.3e-130 463.8
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.8e-211 730.7
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G46520 94.7 2.2e-210 728.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G46520 94.4 2.1e-205 712.2
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G46520 96.1 5.6e-198 687.6
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G46520 86.9 9.6e-198 686.8
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G46520 87.9 9.1e-156 547.4
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G46520 94.6 4.6e-131 465.3
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 6.6e-215 743.8
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 4.0e-212 734.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G12110 93.4 2.4e-204 708.8
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G12110 96.3 1.0e-199 693.3
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G12110 87.2 1.8e-199 692.6
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G12110 87.2 7.0e-156 547.7
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G12110 94.2 2.3e-130 463.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G18780 93.1 7.1e-209 723.8
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.7e-207 719.2
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.3e-207 718.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G18780 89.7 7.9e-200 693.7
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G18780 92.4 2.9e-194 675.2
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G18780 82.2 7.9e-192 667.2
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G18780 83.8 4.0e-151 531.9
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT3G18780 90.8 2.3e-127 453.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT1G49240 93.4 2.4e-209 725.3
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 6.0e-208 720.7
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 7.9e-208 720.3
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT1G49240 89.9 2.7e-200 695.3
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT1G49240 92.1 6.5e-194 674.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT1G49240 82.5 2.7e-192 668.7
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT1G49240 84.1 1.4e-151 533.5
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT1G49240 91.3 8.0e-128 454.5
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.3e-214 741.1
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 8.1e-213 736.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G09810 92.8 4.5e-203 704.5
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G09810 96.1 5.1e-199 691.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G09810 86.4 4.3e-198 688.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G09810 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT5G09810 97.5 2.9e-133 472.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.3e-56 216.5
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 1.7e-56 216.1
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.4e-56 214.2
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT2G19760 72.5 2.3e-53 205.7
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 5.1e-53 204.5
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 2.2e-56 215.7
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 2.9e-56 215.3
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 2.4e-55 212.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 8.6e-53 203.8
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29350 71.8 1.9e-52 202.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.2e-64 242.3
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 3.1e-58 221.9
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 4.5e-57 218.0
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29340 71.6 2.6e-52 202.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 7.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276