Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2647 ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCAAACCCGGTTCCAAATGAAGATGTGAATTTAGCTGATTTGACAGAGGATCCTGTTCATAGATTTGGGGAAGCCATCAGGTTTAGGACCAGACATCGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTTCAATGGAATTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGACATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGATTCTGATGGGAGTTTCTTTGATTGCAACATATGTTTGGACTTGGCTAGGGACCCCGTAGTAACTTGTTGTGGTCATCTATACTGCTGGCCATGCCTTTACCGATGGTTACATCTGCATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAGTGTGACCCCAATTTATGGGCGTGGCAGCAATACCCCTGTGACAGAGGAGGATGCCACGCTTAAGATTCCACTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGGCAAACCATTCAGAGGACTGCATTTGGTTTCCCAGTGGAGGAGATGATCCGTCGATTGGGAAACAGATTTGATTTCCATCGGGACCTAGACCAACCACCAGAGCCAGACAGTTCACATGAAACATTTGGTAGATCTTCAACCTTGTTGAATAGGATTTTGACGTCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCTGCCCATGATGATGTAGGTGATTTAGCACATGCTGATGTGCCTGGCATTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCTGCAGATAGGCTTCCAGATGGATTTTTGTATACTGATCCACTTGTTCCTAGAAATCAAGAGCAGCCTCCTCCACCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCCTCCAGAAGGAGAAATGATCCTTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGTGCACCCAGACGGAGAAGATTGGCTTAA 1278 44.21 MGDEIFDAMNLDLNLGPIPEPLSNPVPNEDVNLADLTEDPVHRFGEAIRFRTRHRWRRRQVQIPSETQNISMELSEIMVNSGNGNSLQTLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKSVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFGFPVEEMIRRLGNRFDFHRDLDQPPEPDSSHETFGRSSTLLNRILTSRGIRREQISLPAHDDVGDLAHADVPGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLVPRNQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDPLQVSDVDSGNSRAPRRRRLA 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40621768 40623045 + Lag0026692.1 Lac10g2647 585178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2647 425 SMART ring_2 141 181 IPR001841 -
Lac10g2647 425 FunFam Zinc finger family protein 122 195 - -
Lac10g2647 425 MobiDBLite consensus disorder prediction 347 367 - -
Lac10g2647 425 MobiDBLite consensus disorder prediction 393 414 - -
Lac10g2647 425 SUPERFAMILY RING/U-box 137 194 - -
Lac10g2647 425 MobiDBLite consensus disorder prediction 393 425 - -
Lac10g2647 425 CDD RING-HC_AtRMA-like 139 182 - -
Lac10g2647 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 201 IPR013083 -
Lac10g2647 425 Pfam RING-type zinc-finger 141 179 IPR027370 -
Lac10g2647 425 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Lac10g2647 425 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Lac10g2647 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 299 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2647 Lac-Chr10:40621768 Lac11g0556 Lac-Chr11:5690174 4.80E-36 dispersed
Lac10g2647 Lac-Chr10:40621768 Lac6g0376 Lac-Chr6:3109359 1.20E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2647 K10666 - csv:101220497 778.474