Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2648 ATGGAGCTGGCTTTGAGCCTTGGTGATGCTTCCATTTCCAATAAGCCATTTGGGTTTCTCTCTAAACCTTCCAATAAGCTTTCTTCTTCTTCTTCTTCCTCTCTAATGGCCTTGGGCTTCTGCGTTGGACTGGCTCATGATTCTGGTTCTGGTTCTGGTTCGGCTTCCGGTTCTGTTCACGATGAAGATGGAAGAGATCTTCAAGATGAAGATGATGATGAGGAAGAAGATGAAAAAACCGTTCTTCCCGGTTCGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTCATCAGCCTTCTTCTCACCACCTTCGATTTCCTTGGCTTTCTGATCACTTGTTGCCGGAACTGGGTTGTTCAGAGGGAGCAGAGAGGGTGTTGGATGTGAACCGGGTGCCGGCGGTGGCAATGATACCGGCGGAGGAGACAGACGAGAGGACGGCGGCGCTGTCGTCTCCGAACAGTACGGTTTCGTCTTTTCAGATGGATTTTGGAGTGAGAAATGGAGGAGGATCGAGGAGTAAGAGATCATCAGATTTGGAAATGGAGACTGAGAGAGCTTCGTCGAGAATCAGTGACGATGAAGAGAACGGATCAGCTCGGAAAAAGCTTCGACTTTCTAAAGAACAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGCACCCTAAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCAGACCTAGGCAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCCTTGAAAACTTCTCAGCCCTTTTATATGCAGCTTCCAGCTACCACTCTCACCATGTGCCCGTCGTGCGAGCGTGTCGCCACCACCGCCCCCACCGCCACCAAAACTACCACCACCACCGCTGCCCCCGCCCCGAACCCGTCCGCTCTTTGCCTCGCCAGTAAGCCGAGGATCTTGCCATTCCCTCACTTGCACCAGGCTGCTTCATGA 1095 49.68 MELALSLGDASISNKPFGFLSKPSNKLSSSSSSSLMALGFCVGLAHDSGSGSGSASGSVHDEDGRDLQDEDDDEEEDEKTVLPGSDPPVQLDLLPLAPVPRSSHQPSSHHLRFPWLSDHLLPELGCSEGAERVLDVNRVPAVAMIPAEETDERTAALSSPNSTVSSFQMDFGVRNGGGSRSKRSSDLEMETERASSRISDDEENGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTAPTATKTTTTTAAPAPNPSALCLASKPRILPFPHLHQAAS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40645162 40646898 + Lag0026693.1 Lac10g2648 585179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2648 364 MobiDBLite consensus disorder prediction 17 32 - -
Lac10g2648 364 Pfam HD-ZIP protein N terminus 130 167 IPR006712 GO:0005634(InterPro)
Lac10g2648 364 MobiDBLite consensus disorder prediction 65 80 - -
Lac10g2648 364 MobiDBLite consensus disorder prediction 48 109 - -
Lac10g2648 364 MobiDBLite consensus disorder prediction 181 210 - -
Lac10g2648 364 Gene3D - 212 262 - -
Lac10g2648 364 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 73 335 IPR050762 -
Lac10g2648 364 SUPERFAMILY Homeodomain-like 206 273 IPR009057 -
Lac10g2648 364 Coils Coil 270 300 - -
Lac10g2648 364 ProSiteProfiles 'Homeobox' domain profile. 204 264 IPR001356 GO:0003677(InterPro)
Lac10g2648 364 MobiDBLite consensus disorder prediction 12 32 - -
Lac10g2648 364 ProSitePatterns 'Homeobox' domain signature. 239 262 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac10g2648 364 SMART HOX_1 206 268 IPR001356 GO:0003677(InterPro)
Lac10g2648 364 Pfam Homeodomain 208 262 IPR001356 GO:0003677(InterPro)
Lac10g2648 364 MobiDBLite consensus disorder prediction 154 180 - -
Lac10g2648 364 Pfam Homeobox associated leucine zipper 264 298 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g2648 364 MobiDBLite consensus disorder prediction 150 210 - -
Lac10g2648 364 FunFam Homeobox-leucine zipper protein 18 192 269 - -
Lac10g2648 364 SMART halz 264 307 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g2648 364 CDD homeodomain 208 265 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2648 Lac-Chr10:40645162 Lac5g0372 Lac-Chr5:3914509 1.90E-57 dispersed
Lac10g2648 Lac-Chr10:40645162 Lac4g2689 Lac-Chr4:45861947 3.10E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22818 PF04618 HD-ZIP_N 3.40E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2648 K09338 - csv:101222778 393.275