Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2715 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCCCAACACAGACATACCCAACAACAACCAAATCAGACTTCCAACAATGGCGCTTTAGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGTTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCTGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCCTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCCGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCAACGACGATGGAGGGAGTAAAGACGACGGCGGCGGTGGCGCTGGCGTTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGAGTGGGTACTGGGCGATTCCTGCGAGGCCGGATTTCGGACAGGTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTTGCTGTTCGTTCAACATTCATTTTTTGGTTTTTTAATGGGTGAGATAATGGCTGACAAGAATTTGGAAGATGGTGATATTGAGCCTGCTCCAAAGCTTATTCAAGTTGTCTTTCAAAACTGCAAAGGTCAAGTGGATCAATGGATTGAACCGTATCTCAGAATCACAATTGAACGCCTGCAACGAACTGAGAAGTCATACTTGAAGTGTCTTCTAATGCAAGTGATTGCTGATGCCCTTTACTACAATGCATCATTATCACTCAGCATATTGCACAAGCTAGGTGTTGCAACAAATGTATTCAATCTTTGGTTTCAGATGCTGCAACAGGTTAAAAAGAGTGGAGTACGAGCTAATTTTAGAAGGGAACAAGATAAAAAAGTTTGCTGCTTGGGATTGACATCATTGCTTGCACTACCAGCCGATCAATTACCAGGGGAGGCTCTTGGGCGTGTTTTTAGGGCCACCCTTGATCTTCTTATTGCATACAAGGATCAAGTTGCAGAAAATGTTGATTCCTATGCCTGCACCTCTTGGCAACTTTACTCGTTTGGAATTCATCTTGTTAAGCGAGAACTGCTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGTCGGAATAGTGTAG 1299 52.19 MSASDAATNNAAIIDHPQHRHTQQQPNQTSNNGALAVKKPPSKDRHSKFDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTNDDGGSKDDGGGGAGVGISVGPSVGSIMGPAAASGYWAIPARPDFGQVWSFAAAAAPEMVIQPAAVSHQALLFVQHSFFGFLMGEIMADKNLEDGDIEPAPKLIQVVFQNCKGQVDQWIEPYLRITIERLQRTEKSYLKCLLMQVIADALYYNASLSLSILHKLGVATNVFNLWFQMLQQVKKSGVRANFRREQDKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLIAYKDQVAENVDSYACTSWQLYSFGIHLVKRELLQMMKWIFSKRSSKRNLVGIV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41590663 41594210 + Lag0026760.1 Lac10g2715 585246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2715 432 MobiDBLite consensus disorder prediction 1 53 - -
Lac10g2715 432 Pfam TCP family transcription factor 42 118 IPR017887 -
Lac10g2715 432 MobiDBLite consensus disorder prediction 1 36 - -
Lac10g2715 432 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 145 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lac10g2715 432 MobiDBLite consensus disorder prediction 39 53 - -
Lac10g2715 432 MobiDBLite consensus disorder prediction 107 130 - -
Lac10g2715 432 SUPERFAMILY ARM repeat 231 383 IPR016024 -
Lac10g2715 432 Gene3D - 207 398 IPR011989 -
Lac10g2715 432 ProSiteProfiles TCP domain profile. 42 96 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2715 Lac-Chr10:41590663 Lac8g2023 Lac-Chr8:38700712 1.30E-110 dispersed
Lac10g2715 Lac-Chr10:41590663 Lac8g2693 Lac-Chr8:44409848 5.80E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22822 PF03634 TCP 5.10E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2715 K20223 - csv:101214586 299.286