Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2715 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCCCAACACAGACATACCCAACAACAACCAAATCAGACTTCCAACAATGGCGCTTTAGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGTTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCTGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCCTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCCGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCAACGACGATGGAGGGAGTAAAGACGACGGCGGCGGTGGCGCTGGCGTTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGAGTGGGTACTGGGCGATTCCTGCGAGGCCGGATTTCGGACAGGTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTTGCTGTTCGTTCAACATTCATTTTTTGGTTTTTTAATGGGTGAGATAATGGCTGACAAGAATTTGGAAGATGGTGATATTGAGCCTGCTCCAAAGCTTATTCAAGTTGTCTTTCAAAACTGCAAAGGTCAAGTGGATCAATGGATTGAACCGTATCTCAGAATCACAATTGAACGCCTGCAACGAACTGAGAAGTCATACTTGAAGTGTCTTCTAATGCAAGTGATTGCTGATGCCCTTTACTACAATGCATCATTATCACTCAGCATATTGCACAAGCTAGGTGTTGCAACAAATGTATTCAATCTTTGGTTTCAGATGCTGCAACAGGTTAAAAAGAGTGGAGTACGAGCTAATTTTAGAAGGGAACAAGATAAAAAAGTTTGCTGCTTGGGATTGACATCATTGCTTGCACTACCAGCCGATCAATTACCAGGGGAGGCTCTTGGGCGTGTTTTTAGGGCCACCCTTGATCTTCTTATTGCATACAAGGATCAAGTTGCAGAAAATGTTGATTCCTATGCCTGCACCTCTTGGCAACTTTACTCGTTTGGAATTCATCTTGTTAAGCGAGAACTGCTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGTCGGAATAGTGTAG 1299 52.19 MSASDAATNNAAIIDHPQHRHTQQQPNQTSNNGALAVKKPPSKDRHSKFDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTNDDGGSKDDGGGGAGVGISVGPSVGSIMGPAAASGYWAIPARPDFGQVWSFAAAAAPEMVIQPAAVSHQALLFVQHSFFGFLMGEIMADKNLEDGDIEPAPKLIQVVFQNCKGQVDQWIEPYLRITIERLQRTEKSYLKCLLMQVIADALYYNASLSLSILHKLGVATNVFNLWFQMLQQVKKSGVRANFRREQDKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLIAYKDQVAENVDSYACTSWQLYSFGIHLVKRELLQMMKWIFSKRSSKRNLVGIV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41590663 41594210 + Lag0026760.1 Lac10g2715 585246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2715 432 MobiDBLite consensus disorder prediction 1 53 - -
Lac10g2715 432 Pfam TCP family transcription factor 42 118 IPR017887 -
Lac10g2715 432 MobiDBLite consensus disorder prediction 1 36 - -
Lac10g2715 432 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 145 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lac10g2715 432 MobiDBLite consensus disorder prediction 39 53 - -
Lac10g2715 432 MobiDBLite consensus disorder prediction 107 130 - -
Lac10g2715 432 SUPERFAMILY ARM repeat 231 383 IPR016024 -
Lac10g2715 432 Gene3D - 207 398 IPR011989 -
Lac10g2715 432 ProSiteProfiles TCP domain profile. 42 96 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2715 K20223 - - csv:101214586 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2715 Lac-Chr10:41590663 Lac8g2023 Lac-Chr8:38700712 1.30E-110 dispersed
Lac10g2715 Lac-Chr10:41590663 Lac8g2693 Lac-Chr8:44409848 5.80E-199 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015941 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22822 PF03634 TCP 5.10E-30 No_clan Lac TF