Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2738 ATGAACAACTCCACAGACTCCGGCGGATCGATGTCCTCCGGCGACGCCGGCAGTTTCCCTTATGTCATCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACTCTTACAATCGCCACCTATTTCTGCACCAGAACCACCGTCCCGGCGCCGATTCGCCGTCGTCGGCTGGAGGAACGGCGGGATTTCGTCGTCGATTTCGGACCGGGGCTGGAAGATGAGGCCATTAATGGATATCCGAAGATTCTGTACTCCGAGGCGAAGTTGGACGGGAAATTGGAGTCCGCCGCCGCGAGCGGCTGCTCGATTTGTTTGGGGGATTATAAAAACGGCGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACATCGGTTGTATCGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGCAGAACATCGCCGGTGCCGACGCCGATTTCGACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA 501 56.69 MNNSTDSGGSMSSGDAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41834505 41835005 - Lag0026783.1 Lac10g2738 585269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2738 166 CDD RING-H2_EL5-like 101 143 - -
Lac10g2738 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lac10g2738 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 160 IPR045899 -
Lac10g2738 166 SMART ring_2 101 142 IPR001841 -
Lac10g2738 166 SUPERFAMILY RING/U-box 76 148 - -
Lac10g2738 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
Lac10g2738 166 Pfam Ring finger domain 101 143 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2738 Lac-Chr10:41834505 Lac7g0140 Lac-Chr7:1107973 2.50E-17 dispersed
Lac1g2322 Lac-Chr1:44567882 Lac10g2738 Lac-Chr10:41834505 6.30E-48 transposed
Lac7g0195 Lac-Chr7:1543241 Lac10g2738 Lac-Chr10:41834505 8.50E-25 transposed
Lac8g2943 Lac-Chr8:46413293 Lac10g2738 Lac-Chr10:41834505 3.50E-08 transposed
Lac10g2738 Lac-Chr10:41834505 Lac13g0587 Lac-Chr13:4351457 6.60E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2738 - - - 0.0