Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2747 ATGAACGATTTGTTCTCCTCTCGCTCCTTCTCTCGCGACAGCCATGTCGTCGAGATGGGCAACGTCTCCTCCTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTCGAGTCCGTTAAAGACGAGCTCAAGGAGCTCGAGCGCCTCTACCAGAACCTCCATGACTCCCATGAGCAGAGCAAGACGCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTGCCCTTGCTCTCAAGAAGGCCAAGCTCATTAAGGTCCGATTGGAGGCCCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCCGGCTCCTCCTCTGACCGGACTCGGACTTCTGTAGTCAACGGGTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAGCAGATCTCCTCTGAGTACAGGGAGACTGTGCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGATATCTTGATTTCTACAGGTGAAAGTGAGACCTTCTTGCAGAAAGCCATTCAAGAGCAAGGTAGAGGCAGAATCTTAGACACCATTAAAGAGATCCAGGAGAGGCATGATGCAGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTAGTGCACGAGCAAGGCGAGAAACTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGAGGCACACAGGAGTTGTCGACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACGATTATCGGCATCATCATTTTGCTGCTCATTGTCCTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAGAATAATAGTACCACTACCACCCCCTAA 918 50.87 MNDLFSSRSFSRDSHVVEMGNVSSSPTAVNLDKFFEDVESVKDELKELERLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTIKEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELSTARVYQKNTRKWTIIGIIILLLIVLVIVLSLQPWKKNNSTTTTP 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41912534 41914237 - Lag0026792.1 Lac10g2747 585278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2747 305 PANTHER SYNTAXIN 33 280 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac10g2747 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Lac10g2747 305 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac10g2747 305 Gene3D - 29 161 - -
Lac10g2747 305 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Lac10g2747 305 Gene3D - 197 293 - -
Lac10g2747 305 Pfam SNARE domain 237 289 IPR000727 -
Lac10g2747 305 CDD SNARE_syntaxin1-like 200 260 - -
Lac10g2747 305 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Lac10g2747 305 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Lac10g2747 305 Coils Coil 126 150 - -
Lac10g2747 305 SMART tSNARE_6 196 263 IPR000727 -
Lac10g2747 305 Coils Coil 31 65 - -
Lac10g2747 305 Coils Coil 201 224 - -
Lac10g2747 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Lac10g2747 305 FunFam Syntaxin 132 194 293 - -
Lac10g2747 305 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0809 Lac-Chr10:6416691 Lac10g2747 Lac-Chr10:41912534 1.80E-90 dispersed
Lac10g2747 Lac-Chr10:41912534 Lac1g2321 Lac-Chr1:44563397 4.70E-110 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2747 K08486 - csv:101208931 526.554