Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2755 ATGGAGGAAATCGAAGTCCCCCACTACTTCCTCTGCCCCATCTCCCTCGACATCATGAAGGATCCCGTCACCCTCCCCTCCGGCATCACCTACGACCGCCACTCCATCGAAACCTGGCTCTTCTCCGACAACCACTCCACCTGCCCTGTCACCAAGCTCCCCATCTCCCCCGACTCCGACTCCGACTCCCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAAGCCTGGTGCACTCTCCACTCCTCTCATGGAATCCAACGCTTCCCCACTCCCAAGCCCCCCGTCACCAAGCCCCAGATCCTCAAGCTCATCTCCTCCGCCTCCTCCTCCTCCTCCCCTTCCTCCCACCTCTCCTGCATCCGCCGCCTCCGCTCCCTCGCCTCCGACTCAGAGGCCAACCGCCGCTCCCTCCAGTCCGCCGGCGCCCCCGAGTTTCTCGCCTCTCTCGTCGCCTCCTCTGACTCCGCCGTCTCCCACGAAGCCCTCTCCACTCTCCACAACCTCCGCCTCTCCGACTCCAAGCTCAAGACCCTCACCTCCAATAACGGGGAGTTTTTCGATTCCTTGACCAGAGTCATGCAGCAGGGGACCTACGAGTCGAGAGCCTACGCTGTTCTGGTTCTCAAGTCCATGGTCGAAGTCGCCGATTCGGTCGAGCTGTCGTTCTTGAAATCCGACTTCTTCGTGGAGATCGTCGGGGTTCTGAAGGACCAGACGACGTCCCCGCAGAGTTTGAAGGCGGCATTGAAGGTTCTGATCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGGCGGTCGAGGCCGGTGGGGTTGGGGCTTTGGTCGAGATCCTACTGGCGGCGGCCGCGGCGGAGAGAAGGGTGTGCGAGATGGCGTTGACGGTGGTGGATTTGCTGTGTGGGTGTGCGGACGGGCGGGCGGCGCTGCTGGGTCACGGCGGAGGGATGGCGGTGGTTTCGAAGAAGATTCTGAGAGTGTCGCAAGTGGGGAGTGAGCGGGCGGTTAGGATTCTTTTTTCGATTGCGAAGTACTCGGGGAGTCCGGCGGTATTGGCGGAAATGGCGGTGGTGGGGATTGTGGCGAAGCTGTGCTTGGTTCTGCAAGTTGAGAGTGGGAACAAGACGAAAGAGAAAGCTAAAGAGATTTTGAAGATGCACGCTCGTGTTTGGAGGAATTCGCCTTGCATTCCTTCCAAATTGGTTTCTTCTTATCCCGCAAATTAG 1227 59.98 MEEIEVPHYFLCPISLDIMKDPVTLPSGITYDRHSIETWLFSDNHSTCPVTKLPISPDSDSDSLTPNHTLRRLIQAWCTLHSSHGIQRFPTPKPPVTKPQILKLISSASSSSSPSSHLSCIRRLRSLASDSEANRRSLQSAGAPEFLASLVASSDSAVSHEALSTLHNLRLSDSKLKTLTSNNGEFFDSLTRVMQQGTYESRAYAVLVLKSMVEVADSVELSFLKSDFFVEIVGVLKDQTTSPQSLKAALKVLIVACPWGRNRVKAVEAGGVGALVEILLAAAAAERRVCEMALTVVDLLCGCADGRAALLGHGGGMAVVSKKILRVSQVGSERAVRILFSIAKYSGSPAVLAEMAVVGIVAKLCLVLQVESGNKTKEKAKEILKMHARVWRNSPCIPSKLVSSYPAN 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42047698 42048924 - Lag0026800.1 Lac10g2755 585286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2755 408 ProSiteProfiles U-box domain profile. 5 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g2755 408 CDD RING-Ubox_PUB 7 58 IPR045210 -
Lac10g2755 408 SUPERFAMILY RING/U-box 3 85 - -
Lac10g2755 408 SUPERFAMILY ARM repeat 88 384 IPR016024 -
Lac10g2755 408 SMART Ubox_2 9 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g2755 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Lac10g2755 408 Gene3D - 84 389 IPR011989 -
Lac10g2755 408 PANTHER WDSAM1 PROTEIN 2 404 IPR045185 GO:0061630(InterPro)
Lac10g2755 408 Pfam U-box domain 6 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2755 Lac-Chr10:42047698 Lac3g1529 Lac-Chr3:14264821 5.30E-69 dispersed
Lac11g2492 Lac-Chr11:41118821 Lac10g2755 Lac-Chr10:42047698 1.50E-06 transposed
Lac1g1729 Lac-Chr1:38772172 Lac10g2755 Lac-Chr10:42047698 6.40E-118 transposed
Lac2g1585 Lac-Chr2:13984452 Lac10g2755 Lac-Chr10:42047698 3.90E-21 transposed
Lac3g1539 Lac-Chr3:14372077 Lac10g2755 Lac-Chr10:42047698 5.70E-40 transposed
Lac3g2896 Lac-Chr3:46261296 Lac10g2755 Lac-Chr10:42047698 1.90E-61 transposed
Lac5g2555 Lac-Chr5:44126330 Lac10g2755 Lac-Chr10:42047698 8.40E-49 transposed
Lac10g2755 Lac-Chr10:42047698 Lac9g2738 Lac-Chr9:45540783 1.10E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2755 - - - 0.0