Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2756 ATGGCGACGTACCTTCATGGCAATTCTGAGTTCCAATCTTCTGATGGTGGCCTTCAGACCCTCGTCTTAATGAATCCCAGCTATGTCCAATTCTCCGATACTCCGCCGCCTCCTCCTCCGTCGCACCCTAATCTCCTCTTCTTCAACTCTGCTGCTGGTGCTAATACCTTCACTACACAGAGTTTGGCTCATCCGCCTTCTCATACTCAACAATTCGTCGGCATCCCGCTCCCGACCACGACGACCGCTTCTCCGACGTCCCAAGACCACAATTCGCATTCCTTGAGTGCCCACCATGATATCTCCGCCTTGCACGGCTTTGTTCCGCGTGTTCAACATAACATTTGGAACCCAATTGACCCATCCACGGCGGCGCGTGAGGCTGCACGCGCTCAGCAGGGGCTGTCTTTGAGCTTGTCTTCACAGCATCCACCCGGTTTCGGGTCTAGAGATGTTCAATCGCAGACCCAACAGGCGGTTTCCGGCGAGGAGAACGTGAGGATCTCCGGTGGATCGTCTTCTTCGGCTTCCGGTATAACCAATGGGGTGGCCGGAATTCAGGGCGTTTTAATCAGCTCCAAATATCTCAAGGCTGCTCAAGAACTTCTGGATGAGGTTGTCAATGTCACCCAAAACGGAATTAAAAACGAATCATCTCCGAAAAAGGCCACTGGGAATCAAACCAAGATGATCGGAGACGCTTCCGCCGCCACAACAACCGCTGACGGTTGTTTGGAAGGAGAAGCCGACGGTAAACGCGCCGCAGAGCTCACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCATAAGCATGCTCGATGAGGTGGAGCAGAGGTACAGGCAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGGTCAGCAAGAACCTACACGGCGCTCGCACTTCAGACGATTTCGAAGCAATTCCGGTGCTTAAAAGACGCCATAACAGGCCAAATCAAAGCTGCAAACAAGAGTTTAGGAGAAGAAGAAAGCATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAGCGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCCCAACGAGGCTTGCCGGAGAGATCCGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACAAGAAGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAGGAGATGTACATGGAGGAAATCAAGGAACAAGAACAGAACGGCGGCGGATCGGCACCGGCGACGGCGGCAGAGAAAAGCAACGACGATTCGAGTTCAAAATCCATAGCTGCACCACCGGAGACAAAAAGCCCGAATTCGAAACAAGAAAACTCCCCAAACCAAAACGTTCATCCTTCAATCTCAATCTCAACATCCTCCGGCGGAAATGTCCGAAACCCATCTGGATTTACCCTCATCGGAACGTCGTCGGAGCTCGACGGAATCACTCAAGGAAGCCCCAAAAAACAGAGAGGCTCCGACATCATCCATTCCTCAAACAACAACAACGTCCCTTTCATAAACATGGACATCAAACCCAGAGAAGAAGAACCACAACAAAATCAAAATCACCATCATCATCATCTTCCAATGAAATTCGACGAAGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATGGGCGGATTCGGCCAATACCCAATCGGCGAAATCGCGAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCTCTGACTCTAGGCCTTCCCCATTGCGAAAATCTCTCTCTAAACGCAGCCACCCACCAATCCTTTCTCCCAAATCAGAGCATCCATTTAGGAAGAAGAACAGAAATCGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCAACAGCTCACTCTTCCACTGCTTTCGAGACCATCAACATCCAAAATGGAAAAAGGTTTGCAGCTCAGTTACTGCCAGACTTTGTGGCCTAA 2121 50.31 MATYLHGNSEFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLLFFNSAAGANTFTTQSLAHPPSHTQQFVGIPLPTTTTASPTSQDHNSHSLSAHHDISALHGFVPRVQHNIWNPIDPSTAAREAARAQQGLSLSLSSQHPPGFGSRDVQSQTQQAVSGEENVRISGGSSSSASGITNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKNESSPKKATGNQTKMIGDASAATTTADGCLEGEADGKRAAELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEESIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGSAPATAAEKSNDDSSSKSIAAPPETKSPNSKQENSPNQNVHPSISISTSSGGNVRNPSGFTLIGTSSELDGITQGSPKKQRGSDIIHSSNNNNVPFINMDIKPREEEPQQNQNHHHHHLPMKFDEERQNRDGYSFLGQPHFNMGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42068568 42071022 - Lag0026801.1 Lac10g2756 585287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2756 706 MobiDBLite consensus disorder prediction 75 96 - -
Lac10g2756 706 MobiDBLite consensus disorder prediction 449 554 - -
Lac10g2756 706 MobiDBLite consensus disorder prediction 455 554 - -
Lac10g2756 706 Coils Coil 262 282 - -
Lac10g2756 706 MobiDBLite consensus disorder prediction 133 179 - -
Lac10g2756 706 SMART HOX_1 378 442 IPR001356 GO:0003677(InterPro)
Lac10g2756 706 MobiDBLite consensus disorder prediction 75 92 - -
Lac10g2756 706 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g2756 706 SUPERFAMILY Homeodomain-like 379 445 IPR009057 -
Lac10g2756 706 SMART prehox3 184 330 IPR006563 -
Lac10g2756 706 MobiDBLite consensus disorder prediction 126 179 - -
Lac10g2756 706 Pfam Associated with HOX 190 329 IPR006563 -
Lac10g2756 706 FunFam BEL1-like homeodomain protein 9 381 443 - -
Lac10g2756 706 Gene3D - 373 452 - -
Lac10g2756 706 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677(InterPro)
Lac10g2756 706 CDD homeodomain 378 439 IPR001356 GO:0003677(InterPro)
Lac10g2756 706 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 485 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2756 Lac-Chr10:42068568 Lac11g2061 Lac-Chr11:36432936 9.90E-71 dispersed
Lac4g2798 Lac-Chr4:46677984 Lac10g2756 Lac-Chr10:42068568 4.50E-71 transposed
Lac6g0198 Lac-Chr6:1548481 Lac10g2756 Lac-Chr10:42068568 9.20E-39 transposed
Lac9g1723 Lac-Chr9:36821664 Lac10g2756 Lac-Chr10:42068568 5.30E-85 transposed
Lac10g2756 Lac-Chr10:42068568 Lac9g2737 Lac-Chr9:45532646 1.30E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22826 PF07526 POX 1.80E-49 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2756 - - - 0.0