Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2827 ATGTCCATAAACCATTTCTCTTCCGACTTCCACCACCATCCCATCATGCTCAACCCCAAATCCTCCGCCACTGCCGCCGTTTCCGCCGCCGACCACCTCCCCAAGCAACCCATGTTCGAGAAACCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCCGAGAAGTACTTTCCCCTCTCCCCGGCCGCCGCCGACTCTGCCGACAAGGGCTTGCTCCTCACCTTCGAAGACGACTCCGGCAAGCTCTGGCGCTTCCGTTACTCTTACTGGAATAGTAGCCAGAGCTACGTGCTCACTAAGGGCTGGAGCCGCTTCGTCAAAGAGAAGCGCCTTGACGCCGGCGACGTCGTCGTTTTTGAACGCCACCGCCGCGATGGGGATAGGCTGTTCATTGGGTGGAAGCGGCGTCCGGCGGCGTCCACGTCGGAGACCACGGCGGCAGCGAGTGGTGGTGGTGGTGGCGGCGGCGGTGGGGGTTGGACTAGAATGCTGTGCTCTGCAAATCCTTATCCTTCTCATCATCATCATCATCTTCTTCCTTCACCGCCATACCAATCTTCTGATTGTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCAACGTGTCGGAACCCGAACCCGAACCGCCATCGACGTTCACGGGCGGGTCCGGTTTGTCGGGTCGAGATCCGACCCGCCACGGCTTCTACACACATTATTCTTCATCACTTCCTCATCACATGGATTTCACTTTCCCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 855 56.84 MSINHFSSDFHHHPIMLNPKSSATAAVSAADHLPKQPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPAAADSADKGLLLTFEDDSGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRPAASTSETTAAASGGGGGGGGGGWTRMLCSANPYPSHHHHHLLPSPPYQSSDCPHAESSVQSQTVSVGNSKILRLFGVDLECQTNVSEPEPEPPSTFTGGSGLSGRDPTRHGFYTHYSSSLPHHMDFTFPQDVKQTKYQG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42821416 42824089 + Lag0026872.1 Lac10g2827 585358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2827 284 MobiDBLite consensus disorder prediction 232 247 - -
Lac10g2827 284 Gene3D - 28 157 IPR015300 -
Lac10g2827 284 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 224 IPR044800 GO:0003700(InterPro)
Lac10g2827 284 CDD B3_DNA 37 134 IPR003340 GO:0003677(InterPro)
Lac10g2827 284 SMART B3_2 39 145 IPR003340 GO:0003677(InterPro)
Lac10g2827 284 MobiDBLite consensus disorder prediction 229 255 - -
Lac10g2827 284 Pfam B3 DNA binding domain 39 144 IPR003340 GO:0003677(InterPro)
Lac10g2827 284 ProSiteProfiles B3 DNA-binding domain profile. 39 145 IPR003340 GO:0003677(InterPro)
Lac10g2827 284 SUPERFAMILY DNA-binding pseudobarrel domain 34 144 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2827 Lac-Chr10:42821416 Lac11g1849 Lac-Chr11:33348978 3.60E-40 dispersed
Lac10g2827 Lac-Chr10:42821416 Lac12g1184 Lac-Chr12:16011459 2.10E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22830 PF02362 B3 6.90E-31 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2827 K09287 - csv:101214938 408.297