Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2836 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTTACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTACAAACACGCACCGAGAACGTGTAGGAACTTTATTGAGCTTTCTCGGCGAGGTTATTACGACAATGTCAAATTTCATCGGATTATTAAGGATTTTGTAGTTCAAGGTGGAGATCCCACAGGAACTGGACGAGGTGGGGAATCTATTTATGGTAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCATACTGGAGCTGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTGGATGGGAAGCATTCCATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTCCAAACTGATAACAATGATAGGTATCTAGAAATCATTAGGAAGAAGTTTAACCCCTTAAAGGCATCCCAAGATAATCAAGGGGCCAGCTCTGCAGAGCACATCTGA 534 44.38 MWASAEGGPPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFVVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRYLEIIRKKFNPLKASQDNQGASSAEHI 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42913641 42916112 + Lag0026881.1 Lac10g2836 585367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2836 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 SUPERFAMILY Cyclophilin-like 12 153 IPR029000 -
Lac10g2836 177 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 160 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Lac10g2836 177 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 150 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac10g2836 177 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Lac10g2836 177 Gene3D - 3 165 IPR029000 -
Lac10g2836 177 FunFam Peptidyl-prolyl cis-trans isomerase 2 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2836 Lac-Chr10:42913641 Lac7g0310 Lac-Chr7:2379499 1.00E-40 dispersed
Lac10g2836 Lac-Chr10:42913641 Lac4g1612 Lac-Chr4:34791250 1.20E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2836 K12733 - csv:101222111 307.76