Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2895 ATGGACTTTCATCTGAAGCAATGTGGAAACCAGGAGGAGTCAGAGCAACAACATTCTGCAAAGATATCTAAGTTTTTTGTTGAAGAACTTAGACATCATCAGCAGCAGCAGCATCAGCCAGAGTCCTCTGTTTCCTCTGTTCTTCCTTTGTTTGTACCTGATTCCAACAACTCCAAAACTTCTACAATCTTGTCAGCATTTCCAGATTCAACTTCTTCTACTCATAGATTGCCAAGGATGTGGGGTTATTTCAGTGTGGCTCAAAGGCAGGAGCTTGAGCTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCCGCCGTGCCGCTGGAGCTTCTCCAACCCATCAAGAAAAGCCTTCTCTCCTCCACTACTCCATTTTTTCTTCATCATCCTCTTCAACATTTCCCTCACTATCCCACTTCTTTGTTGCAAGCAGGGTATTGGGGCAGAGCCGCCATGGATCCGGAGCCCGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCGAGAGATGTGGTCGCCGGCCAGAAGTACTGTGAGCGCCACATGCACCGCGGCCGTAATCGTTCAAGAAAGCCTGTGGAAACTGCCACAACTAATTCCACCACCACCACCGCCGCTGTAGCTGGCGGCGGCGGCGGTTGTTCTCTCAGTTCCAACACCAACCGTGTTGTTGGTGGTGGTGGTCGGCCTTTTCTGACTGTGGAAAGTGGGAATTATTTCTCTGTGTCTGGACAAACCCCATCCGTTGATCTTCTCCATCTGAATCAAGGTGCTCGCTCTGATTCCTTATCGGAGAACAAGAATTTCTATGAATCTCATAAGGAAGCCTCCGCCGGAGACGGCAAATCCGACGGCCATATATTGAGGCATTTCTTCGATGATTGGCCAAGGTCCGCCAATGGTGGGAGCGACAACAATGTCGGCCAACAAATGAATTCCACGTCTGCCTCGGCTACTTCCCTTTCGATTTCAATGCCTGGTAACCCGTCGTCGTCCTCTGACGTTTCGTTGAAATTGTCTACGGGAGGAAGTTCTGATCAAGGCAGTGGCCATCATCATATTCATCATAATGGCAATTCCGATCGGGAGCACGTGCAGTTGAATTGGGCTGCTGGGTGGGCTGCCACGCAGATGGCGTCGATGGGTGGACCGCTGGCCGAGGCGCTGCGCTCGGCCAACAACAACTCGTCTCCGACGAGTGTGCTGCATCAGTTGCAAAGAGCAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1269 51.22 MDFHLKQCGNQEESEQQHSAKISKFFVEELRHHQQQQHQPESSVSSVLPLFVPDSNNSKTSTILSAFPDSTSSTHRLPRMWGYFSVAQRQELELQALIFRYMLAGAAVPLELLQPIKKSLLSSTTPFFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATTNSTTTTAAVAGGGGGCSLSSNTNRVVGGGGRPFLTVESGNYFSVSGQTPSVDLLHLNQGARSDSLSENKNFYESHKEASAGDGKSDGHILRHFFDDWPRSANGGSDNNVGQQMNSTSASATSLSISMPGNPSSSSDVSLKLSTGGSSDQGSGHHHIHHNGNSDREHVQLNWAAGWAATQMASMGGPLAEALRSANNNSSPTSVLHQLQRATNSEASFIST 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43538595 43540758 - Lag0026940.1 Lac10g2895 585426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2895 422 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g2895 422 SMART QLQ_2 82 118 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g2895 422 Pfam QLQ 84 116 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g2895 422 MobiDBLite consensus disorder prediction 196 216 - -
Lac10g2895 422 MobiDBLite consensus disorder prediction 188 216 - -
Lac10g2895 422 ProSiteProfiles WRC domain profile. 155 199 IPR014977 -
Lac10g2895 422 MobiDBLite consensus disorder prediction 303 352 - -
Lac10g2895 422 Pfam WRC 156 198 IPR014977 -
Lac10g2895 422 PANTHER GROWTH-REGULATING FACTOR 5 46 335 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lac10g2895 422 MobiDBLite consensus disorder prediction 303 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2895 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2895 Lac-Chr10:43538595 Lac6g3101 Lac-Chr6:48463371 6.20E-28 dispersed
Lac10g2895 Lac-Chr10:43538595 Lac3g1074 Lac-Chr3:8806355 1.20E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1025 . . . . Bpe04g01542 . . . Cmo06g00458 Cmo14g00280 . . . . . . Cpe08g01033 . . . . . . . . . . . . . . . . Cone13ag1203 Cone19ag1189 . . . Cme04g02423 . Blo09g00512 Bda03g01681 . . . . . Sed02g0553 . . Cma06g00457 Cma14g00291 Car06g00398 Car14g00261 Cpe03g00250 . Bhi11g01964 Tan08g1759 Cmetu04g0675 Lac10g2895 . . . Cla10g01826 Cam10g1886 Cec10g1941 Cco10g1912 Clacu10g1901 Cmu10g2647 Cre10g2036 Lsi03g01923 Csa03g03391 Chy04g01955 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2895 . 1 309 GRF Transcription Factor Family AT2G36400 52.6 2.0e-60 230.7
Lac10g2895 . 1 302 GRF Transcription Factor Family AT3G52910 53.8 8.8e-58 221.9
Lac12g2484 . 11 349 GRF Transcription Factor Family AT3G13960 50.9 2.2e-51 200.7
Lac6g3101 . 2 110 GRF Transcription Factor Family AT3G13960 73.0 3.8e-43 173.3
Lac3g1074 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 9.3e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005938 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22834 PF08879 WRC 2.70E-22 No_clan Lac TF