Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2895 ATGGACTTTCATCTGAAGCAATGTGGAAACCAGGAGGAGTCAGAGCAACAACATTCTGCAAAGATATCTAAGTTTTTTGTTGAAGAACTTAGACATCATCAGCAGCAGCAGCATCAGCCAGAGTCCTCTGTTTCCTCTGTTCTTCCTTTGTTTGTACCTGATTCCAACAACTCCAAAACTTCTACAATCTTGTCAGCATTTCCAGATTCAACTTCTTCTACTCATAGATTGCCAAGGATGTGGGGTTATTTCAGTGTGGCTCAAAGGCAGGAGCTTGAGCTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCCGCCGTGCCGCTGGAGCTTCTCCAACCCATCAAGAAAAGCCTTCTCTCCTCCACTACTCCATTTTTTCTTCATCATCCTCTTCAACATTTCCCTCACTATCCCACTTCTTTGTTGCAAGCAGGGTATTGGGGCAGAGCCGCCATGGATCCGGAGCCCGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCGAGAGATGTGGTCGCCGGCCAGAAGTACTGTGAGCGCCACATGCACCGCGGCCGTAATCGTTCAAGAAAGCCTGTGGAAACTGCCACAACTAATTCCACCACCACCACCGCCGCTGTAGCTGGCGGCGGCGGCGGTTGTTCTCTCAGTTCCAACACCAACCGTGTTGTTGGTGGTGGTGGTCGGCCTTTTCTGACTGTGGAAAGTGGGAATTATTTCTCTGTGTCTGGACAAACCCCATCCGTTGATCTTCTCCATCTGAATCAAGGTGCTCGCTCTGATTCCTTATCGGAGAACAAGAATTTCTATGAATCTCATAAGGAAGCCTCCGCCGGAGACGGCAAATCCGACGGCCATATATTGAGGCATTTCTTCGATGATTGGCCAAGGTCCGCCAATGGTGGGAGCGACAACAATGTCGGCCAACAAATGAATTCCACGTCTGCCTCGGCTACTTCCCTTTCGATTTCAATGCCTGGTAACCCGTCGTCGTCCTCTGACGTTTCGTTGAAATTGTCTACGGGAGGAAGTTCTGATCAAGGCAGTGGCCATCATCATATTCATCATAATGGCAATTCCGATCGGGAGCACGTGCAGTTGAATTGGGCTGCTGGGTGGGCTGCCACGCAGATGGCGTCGATGGGTGGACCGCTGGCCGAGGCGCTGCGCTCGGCCAACAACAACTCGTCTCCGACGAGTGTGCTGCATCAGTTGCAAAGAGCAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1269 51.22 MDFHLKQCGNQEESEQQHSAKISKFFVEELRHHQQQQHQPESSVSSVLPLFVPDSNNSKTSTILSAFPDSTSSTHRLPRMWGYFSVAQRQELELQALIFRYMLAGAAVPLELLQPIKKSLLSSTTPFFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATTNSTTTTAAVAGGGGGCSLSSNTNRVVGGGGRPFLTVESGNYFSVSGQTPSVDLLHLNQGARSDSLSENKNFYESHKEASAGDGKSDGHILRHFFDDWPRSANGGSDNNVGQQMNSTSASATSLSISMPGNPSSSSDVSLKLSTGGSSDQGSGHHHIHHNGNSDREHVQLNWAAGWAATQMASMGGPLAEALRSANNNSSPTSVLHQLQRATNSEASFIST 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43538595 43540758 - Lag0026940.1 Lac10g2895 585426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2895 422 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g2895 422 SMART QLQ_2 82 118 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g2895 422 Pfam QLQ 84 116 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g2895 422 MobiDBLite consensus disorder prediction 196 216 - -
Lac10g2895 422 MobiDBLite consensus disorder prediction 188 216 - -
Lac10g2895 422 ProSiteProfiles WRC domain profile. 155 199 IPR014977 -
Lac10g2895 422 MobiDBLite consensus disorder prediction 303 352 - -
Lac10g2895 422 Pfam WRC 156 198 IPR014977 -
Lac10g2895 422 PANTHER GROWTH-REGULATING FACTOR 5 46 335 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lac10g2895 422 MobiDBLite consensus disorder prediction 303 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2895 Lac-Chr10:43538595 Lac6g3101 Lac-Chr6:48463371 6.20E-28 dispersed
Lac10g2895 Lac-Chr10:43538595 Lac3g1074 Lac-Chr3:8806355 1.20E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22834 PF08879 WRC 2.70E-22 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2895 - - - 0.0