Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2906 ATGGCTTCCTCCGGCCGCCACCCCGTCTACCGAGGCGTCCGCCGACGCAACACCGGCAAATGGGTCTCCGAGATTCGCGAGCCCAGGAAACCCAACAGGATTTGGCTCGGGACCTTCCCGACCGCCGAAATGGCCGCCGTGGCCTACGATGTTGCCGCCCTCGCCCTCAAGGGCCACGACGCTGAGCTCAATTTCCCCAATTCCGCTCCTTCTCTCCCCGTCCCTGCTTCGCGGTCCCCGTCTGATATCCAGGCGGCCGCCGCCTCTGCTGCAGCTGCGCTTGGAGCGGCTGCTGCGGCGATGGAGGCCCGGAATGGTGGTCCTCGTCGTGGCCGTGGTAGTTCTTCTGGAAGTAATTCGAGCCATGGCTATGGAGCGAGATATGATCAAGAGGAGGTGGGAGGTCAATTCATTGACGAGGATTTGATTTTTGATATGCCTAATGTTTTGATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCACGGCGGAGATGACGACGGAGACGACGACGGTGACCAAAACCTTTGGGATTTTTCCTAA 558 58.96 MASSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDAELNFPNSAPSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNGGPRRGRGSSSGSNSSHGYGARYDQEEVGGQFIDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGDDDGDQNLWDFS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43656824 43657381 - Lag0026951.1 Lac10g2906 585437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2906 185 Gene3D AP2/ERF domain 9 67 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 CDD AP2 10 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 MobiDBLite consensus disorder prediction 103 128 - -
Lac10g2906 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 183 IPR045277 GO:0003700(InterPro)
Lac10g2906 185 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677(InterPro)
Lac10g2906 185 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 MobiDBLite consensus disorder prediction 111 125 - -
Lac10g2906 185 MobiDBLite consensus disorder prediction 171 185 - -
Lac10g2906 185 Pfam AP2 domain 8 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 SMART rav1_2 9 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g2906 185 FunFam Ethylene-responsive transcription factor 2 8 67 - -
Lac10g2906 185 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2906 Lac-Chr10:43656824 Lac1g2243 Lac-Chr1:43829649 7.10E-37 dispersed
Lac10g2904 Lac-Chr10:43634936 Lac10g2906 Lac-Chr10:43656824 1.20E-19 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22836 PF00847 AP2 3.70E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2906 - - - 0.0