Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2906 | ATGGCTTCCTCCGGCCGCCACCCCGTCTACCGAGGCGTCCGCCGACGCAACACCGGCAAATGGGTCTCCGAGATTCGCGAGCCCAGGAAACCCAACAGGATTTGGCTCGGGACCTTCCCGACCGCCGAAATGGCCGCCGTGGCCTACGATGTTGCCGCCCTCGCCCTCAAGGGCCACGACGCTGAGCTCAATTTCCCCAATTCCGCTCCTTCTCTCCCCGTCCCTGCTTCGCGGTCCCCGTCTGATATCCAGGCGGCCGCCGCCTCTGCTGCAGCTGCGCTTGGAGCGGCTGCTGCGGCGATGGAGGCCCGGAATGGTGGTCCTCGTCGTGGCCGTGGTAGTTCTTCTGGAAGTAATTCGAGCCATGGCTATGGAGCGAGATATGATCAAGAGGAGGTGGGAGGTCAATTCATTGACGAGGATTTGATTTTTGATATGCCTAATGTTTTGATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCACGGCGGAGATGACGACGGAGACGACGACGGTGACCAAAACCTTTGGGATTTTTCCTAA | 558 | 58.96 | MASSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDAELNFPNSAPSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNGGPRRGRGSSSGSNSSHGYGARYDQEEVGGQFIDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGDDDGDQNLWDFS | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 43656824 | 43657381 | - | Lag0026951.1 | Lac10g2906 | 585437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2906 | 185 | Gene3D | AP2/ERF domain | 9 | 67 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | CDD | AP2 | 10 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
Lac10g2906 | 185 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 5 | 183 | IPR045277 | GO:0003700(InterPro) | |
Lac10g2906 | 185 | SUPERFAMILY | DNA-binding domain | 9 | 68 | IPR016177 | GO:0003677(InterPro) | |
Lac10g2906 | 185 | PRINTS | Ethylene responsive element binding protein signature | 10 | 21 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | PRINTS | Ethylene responsive element binding protein signature | 32 | 48 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | ProSiteProfiles | AP2/ERF domain profile. | 9 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
Lac10g2906 | 185 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
Lac10g2906 | 185 | Pfam | AP2 domain | 8 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | SMART | rav1_2 | 9 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g2906 | 185 | FunFam | Ethylene-responsive transcription factor 2 | 8 | 67 | - | - | |
Lac10g2906 | 185 | MobiDBLite | consensus disorder prediction | 162 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2906 | Lac-Chr10:43656824 | Lac1g2243 | Lac-Chr1:43829649 | 7.10E-37 | dispersed | |
Lac10g2904 | Lac-Chr10:43634936 | Lac10g2906 | Lac-Chr10:43656824 | 1.20E-19 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22836 | PF00847 | AP2 | 3.70E-13 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2906 | - | - | - | 0.0 |