Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2914 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCCCCGACTCGCCGATGAGGCTGAGCGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGGACCAATATTGTGCAACCCAGATTTCGAGCAAGTGATAGAGATTCGGGAAGCAGCGACTCTGGTCGAGGGGGGTATCAGCCTCAGCCGCCGCAGCATCAGGAACTCGTCAGCCAGTATAGGACCGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACGAATTTAACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGATCTCTGCCACCGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCATCACTTTATCTACTGGACAGCATTGTAAAGAATATTGGAAGAGATTACATAAAGTACTTTGCAGCAAGACTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCTGTACATCCAAGTATGAGACATCTCTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATAGAGAAAGAACTTGGCTTCATGCCCAGCAGTAGTTCTTCTTCTGGGACCATAACCTCAAAGCCAGATTTGCAGGCACAACGTCCAGCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGCGCAACCACAAATGTAACTCAGGATGTTTCCCAAGCTAAAATTAGTACGGGACGTCCATGGGCAGATGCTCCAATCAAAGTGCTTGACATTCATCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGCATATGCAGACTATGAATATGGTTCTGATCTTCCAAGGACAACAGGTATCGGAAGAAGGGTTGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCCGCAAACACTGGTGCACGTCTACTGCCCATGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATTATGGCAGGTCATGGTGCACCTGCCATTGCCAGTAGCACTGGGAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATTGAAAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCGCAATCATCCGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGATCCAATATCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAAGAATTCAGCTCAGTCAGGAGGTTATGGTGCTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAGATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAATAAAGGAGGTTCAGGGTCCATTGGGACTGTAGGCCATCAAAGGTTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGCCCCCCTTCATCATTGTTAGTGGATCACGTTCCTCATCAAATGCACGACCATAAAACTTCTTCACTATCTAATCTTGACCCACGTAAAAGGCATATGCAGGATGCTGCCCTTGGCCTGCATCCTAGCGTTCGGCCAGATAACCTTCAAAAATCACAGCCTCAGGACCTTCAAGCTTCAGTTTCATCCGTACCTGCTTCTCAACCCAAGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGACGTCACGCAGTCAGAACTTTCTATTCAGCATGCAGTATCAATTCCGGGCACCAATTTTGGACCACCCTCATCAGCTGGGACAGTTCCAGATCTACCCGCAGAAATTTTGGGGGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTCTCCAACCATTCAATGACCAGTAGCATGCAGCAGAATATCAGCTTTCAAGATGTGGGAAATATGCCACCCCGTTCAAGCATCAAACCTCCTTTACCAAGCCGGTCTTCTCCCGCCAAGACTGTGGGAGAGTCTTCTTTAGGTCCTCCATCTCTTGAAAGCCCGTCAGTTCTGGTTAAGCTATCTCAGACCAAGCTAGAAGAGACATCGTTGCCACCTGATCCACTTCCACCTTCATCTCCTCTGAATAATGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCGATTTCGAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAGGGAGAATTAACTAATAGCGCAACATCCCAGATGCCTTCACAGCCTGAAAGTAAGTCAGGTGATGCCGTGACTTGTTCTTTACCAGTTCCTTCCATCCCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTTCCAGTCTGTCATCTATGGGACTTGAATCACCTTCAAAAGCTGCTGCTAAAAGCTCCACTAGTCCACCTCCATCCTCCACAACTGAAATAAATAACCTTATAGGCTTTGAATTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGACATTCCATATCAATGTAAGATCTGTGGTCTTAGACTGAAACTTGAAAAACAGTTGGATACACACTCGCAGTGGCACACAATTAGAACTGAGGCAAACAATTCAAATAGGGCACCAAGAAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTAGACTTCTGCTTGACGCTGCCCCTTCTCTGGACAAGTCCGACATGATGGAAGAAGATAGCGAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCTTGTGTCTTATGTGGTGAACTTTTCGAAGATTTTTATAGTCAAGAGTTGGGTAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCTTCAGCGGGTAGTGAGGTAGGAAGCACAAATGAACAAGTTGCTAGAGGACCCATTGTGCACACAGAGTGTTTAACAGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATGTTAAGTTGTCCAAAGATAGTGCTGAATGTTATGGCATTGGACTGGTAAAGAAATGGATGTATGATGCTTCCCCTGCAAAACGTCATATAGGAACTACTCTGGTGGACATCCTGCTTGTGCAATTGGCAGGGGGGATGCGAAAAAGGAGTACGAATATGAGTGCTTCACCTGTGGTAGTTCCGTTGAGTGCCAAAAGAGATAATAGGGAGTGGTAG 3420 46.4 MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFMPSSSSSSGTITSKPDLQAQRPAHSIHVNPKYIERQRLQQSGRVKGMTSDATGATTNVTQDVSQAKISTGRPWADAPIKVLDIHRPLRDAPNDMAQEKNITAAYADYEYGSDLPRTTGIGRRVVDEGRDKPWSSAGSNLAEKLSGQRNGFNIKLGYENYPAPKSANTGARLLPMQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSIMAGHGAPAIASSTGKDQWTPEDSDNSGIENKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSSMWQVQDPISLDGLRGGVPRKNSAQSGGYGANSSVDQMGGRPQITSSNIGASGHGFLNKGGSGSIGTVGHQRFPSRSVAFPSGQPPLHQRPPSSLLVDHVPHQMHDHKTSSLSNLDPRKRHMQDAALGLHPSVRPDNLQKSQPQDLQASVSSVPASQPKHQFSLSESLKPDVTQSELSIQHAVSIPGTNFGPPSSAGTVPDLPAEILGEPSTSSLLAAVMKSGIFSNHSMTSSMQQNISFQDVGNMPPRSSIKPPLPSRSSPAKTVGESSLGPPSLESPSVLVKLSQTKLEETSLPPDPLPPSSPLNNASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSATSQMPSQPESKSGDAVTCSLPVPSIPVPVPSIPVSSSSLSSMGLESPSKAAAKSSTSPPPSSTTEINNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKLEKQLDTHSQWHTIRTEANNSNRAPRRWYPSSDDWVSGNARLLLDAAPSLDKSDMMEEDSEPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGAMYITIPSAGSEVGSTNEQVARGPIVHTECLTESSVYDLGLATDVKLSKDSAECYGIGLVKKWMYDASPAKRHIGTTLVDILLVQLAGGMRKRSTNMSASPVVVPLSAKRDNREW 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43740027 43746862 - Lag0026959.1 Lac10g2914 585445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2914 1139 SMART 558neu5 80 202 IPR006569 -
Lac10g2914 1139 SUPERFAMILY ENTH/VHS domain 77 201 IPR008942 -
Lac10g2914 1139 Pfam CID domain 87 195 IPR006569 -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 415 514 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 1 29 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 453 482 - -
Lac10g2914 1139 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Lac10g2914 1139 ProSiteProfiles Zinc finger C2H2 type domain profile. 919 946 IPR013087 -
Lac10g2914 1139 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 731 768 - -
Lac10g2914 1139 ProSitePatterns Zinc finger C2H2 type domain signature. 921 941 IPR013087 -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 715 792 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 820 837 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 605 680 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 820 842 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 63 77 - -
Lac10g2914 1139 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1075 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Lac10g2914 1139 MobiDBLite consensus disorder prediction 610 670 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 500 514 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 859 886 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 421 441 - -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 1 77 - -
Lac10g2914 1139 CDD CID_Pcf11 82 194 IPR047415 -
Lac10g2914 1139 MobiDBLite consensus disorder prediction 549 570 - -
Lac10g2914 1139 Gene3D - 72 202 IPR008942 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0707 Lac-Chr10:5446038 Lac10g2914 Lac-Chr10:43740027 1.50E-75 dispersed
Lac10g2914 Lac-Chr10:43740027 Lac10g2918 Lac-Chr10:43784285 9.80E-145 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2914 K14400 - csv:101223169 1746.87