Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2914 | ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCCCCGACTCGCCGATGAGGCTGAGCGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGGACCAATATTGTGCAACCCAGATTTCGAGCAAGTGATAGAGATTCGGGAAGCAGCGACTCTGGTCGAGGGGGGTATCAGCCTCAGCCGCCGCAGCATCAGGAACTCGTCAGCCAGTATAGGACCGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACGAATTTAACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGATCTCTGCCACCGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCATCACTTTATCTACTGGACAGCATTGTAAAGAATATTGGAAGAGATTACATAAAGTACTTTGCAGCAAGACTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCTGTACATCCAAGTATGAGACATCTCTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATAGAGAAAGAACTTGGCTTCATGCCCAGCAGTAGTTCTTCTTCTGGGACCATAACCTCAAAGCCAGATTTGCAGGCACAACGTCCAGCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGCGCAACCACAAATGTAACTCAGGATGTTTCCCAAGCTAAAATTAGTACGGGACGTCCATGGGCAGATGCTCCAATCAAAGTGCTTGACATTCATCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGCATATGCAGACTATGAATATGGTTCTGATCTTCCAAGGACAACAGGTATCGGAAGAAGGGTTGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCCGCAAACACTGGTGCACGTCTACTGCCCATGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATTATGGCAGGTCATGGTGCACCTGCCATTGCCAGTAGCACTGGGAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATTGAAAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCGCAATCATCCGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGATCCAATATCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAAGAATTCAGCTCAGTCAGGAGGTTATGGTGCTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAGATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAATAAAGGAGGTTCAGGGTCCATTGGGACTGTAGGCCATCAAAGGTTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGCCCCCCTTCATCATTGTTAGTGGATCACGTTCCTCATCAAATGCACGACCATAAAACTTCTTCACTATCTAATCTTGACCCACGTAAAAGGCATATGCAGGATGCTGCCCTTGGCCTGCATCCTAGCGTTCGGCCAGATAACCTTCAAAAATCACAGCCTCAGGACCTTCAAGCTTCAGTTTCATCCGTACCTGCTTCTCAACCCAAGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGACGTCACGCAGTCAGAACTTTCTATTCAGCATGCAGTATCAATTCCGGGCACCAATTTTGGACCACCCTCATCAGCTGGGACAGTTCCAGATCTACCCGCAGAAATTTTGGGGGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTCTCCAACCATTCAATGACCAGTAGCATGCAGCAGAATATCAGCTTTCAAGATGTGGGAAATATGCCACCCCGTTCAAGCATCAAACCTCCTTTACCAAGCCGGTCTTCTCCCGCCAAGACTGTGGGAGAGTCTTCTTTAGGTCCTCCATCTCTTGAAAGCCCGTCAGTTCTGGTTAAGCTATCTCAGACCAAGCTAGAAGAGACATCGTTGCCACCTGATCCACTTCCACCTTCATCTCCTCTGAATAATGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCGATTTCGAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAGGGAGAATTAACTAATAGCGCAACATCCCAGATGCCTTCACAGCCTGAAAGTAAGTCAGGTGATGCCGTGACTTGTTCTTTACCAGTTCCTTCCATCCCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTTCCAGTCTGTCATCTATGGGACTTGAATCACCTTCAAAAGCTGCTGCTAAAAGCTCCACTAGTCCACCTCCATCCTCCACAACTGAAATAAATAACCTTATAGGCTTTGAATTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGACATTCCATATCAATGTAAGATCTGTGGTCTTAGACTGAAACTTGAAAAACAGTTGGATACACACTCGCAGTGGCACACAATTAGAACTGAGGCAAACAATTCAAATAGGGCACCAAGAAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTAGACTTCTGCTTGACGCTGCCCCTTCTCTGGACAAGTCCGACATGATGGAAGAAGATAGCGAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCTTGTGTCTTATGTGGTGAACTTTTCGAAGATTTTTATAGTCAAGAGTTGGGTAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCTTCAGCGGGTAGTGAGGTAGGAAGCACAAATGAACAAGTTGCTAGAGGACCCATTGTGCACACAGAGTGTTTAACAGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATGTTAAGTTGTCCAAAGATAGTGCTGAATGTTATGGCATTGGACTGGTAAAGAAATGGATGTATGATGCTTCCCCTGCAAAACGTCATATAGGAACTACTCTGGTGGACATCCTGCTTGTGCAATTGGCAGGGGGGATGCGAAAAAGGAGTACGAATATGAGTGCTTCACCTGTGGTAGTTCCGTTGAGTGCCAAAAGAGATAATAGGGAGTGGTAG | 3420 | 46.4 | MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFMPSSSSSSGTITSKPDLQAQRPAHSIHVNPKYIERQRLQQSGRVKGMTSDATGATTNVTQDVSQAKISTGRPWADAPIKVLDIHRPLRDAPNDMAQEKNITAAYADYEYGSDLPRTTGIGRRVVDEGRDKPWSSAGSNLAEKLSGQRNGFNIKLGYENYPAPKSANTGARLLPMQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSIMAGHGAPAIASSTGKDQWTPEDSDNSGIENKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSSMWQVQDPISLDGLRGGVPRKNSAQSGGYGANSSVDQMGGRPQITSSNIGASGHGFLNKGGSGSIGTVGHQRFPSRSVAFPSGQPPLHQRPPSSLLVDHVPHQMHDHKTSSLSNLDPRKRHMQDAALGLHPSVRPDNLQKSQPQDLQASVSSVPASQPKHQFSLSESLKPDVTQSELSIQHAVSIPGTNFGPPSSAGTVPDLPAEILGEPSTSSLLAAVMKSGIFSNHSMTSSMQQNISFQDVGNMPPRSSIKPPLPSRSSPAKTVGESSLGPPSLESPSVLVKLSQTKLEETSLPPDPLPPSSPLNNASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSATSQMPSQPESKSGDAVTCSLPVPSIPVPVPSIPVSSSSLSSMGLESPSKAAAKSSTSPPPSSTTEINNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKLEKQLDTHSQWHTIRTEANNSNRAPRRWYPSSDDWVSGNARLLLDAAPSLDKSDMMEEDSEPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGAMYITIPSAGSEVGSTNEQVARGPIVHTECLTESSVYDLGLATDVKLSKDSAECYGIGLVKKWMYDASPAKRHIGTTLVDILLVQLAGGMRKRSTNMSASPVVVPLSAKRDNREW | 1139 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 43740027 | 43746862 | - | Lag0026959.1 | Lac10g2914 | 585445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2914 | 1139 | SMART | 558neu5 | 80 | 202 | IPR006569 | - | |
Lac10g2914 | 1139 | SUPERFAMILY | ENTH/VHS domain | 77 | 201 | IPR008942 | - | |
Lac10g2914 | 1139 | Pfam | CID domain | 87 | 195 | IPR006569 | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 415 | 514 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 453 | 482 | - | - | |
Lac10g2914 | 1139 | FunFam | polyadenylation and cleavage factor homolog 4 | 74 | 202 | - | - | |
Lac10g2914 | 1139 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 919 | 946 | IPR013087 | - | |
Lac10g2914 | 1139 | ProSiteProfiles | CID domain profile. | 77 | 205 | IPR006569 | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 731 | 768 | - | - | |
Lac10g2914 | 1139 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 921 | 941 | IPR013087 | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 715 | 792 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 820 | 837 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 605 | 680 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 820 | 842 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
Lac10g2914 | 1139 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 58 | 1075 | IPR045154 | GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro) | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 610 | 670 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 500 | 514 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 859 | 886 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 421 | 441 | - | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Lac10g2914 | 1139 | CDD | CID_Pcf11 | 82 | 194 | IPR047415 | - | |
Lac10g2914 | 1139 | MobiDBLite | consensus disorder prediction | 549 | 570 | - | - | |
Lac10g2914 | 1139 | Gene3D | - | 72 | 202 | IPR008942 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0707 | Lac-Chr10:5446038 | Lac10g2914 | Lac-Chr10:43740027 | 1.50E-75 | dispersed | |
Lac10g2914 | Lac-Chr10:43740027 | Lac10g2918 | Lac-Chr10:43784285 | 9.80E-145 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2914 | K14400 | - | csv:101223169 | 1746.87 |