Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2917 | ATGTGTAATGTGTATGGTTCTCAGCTTCTCTCTCCGACAATCGAATTCCAGAAAGAGACGCGCACCGGAAAAGCTGAAGAAATCGAACAGAGCCCAATTCTTCATCGCTTCGATGGTGGATTTCCGGCTCCAAACGGATTCCAGGTGATCGGAATTCTCACTATCTCGATGGAAATGCCCGGCAGGAGGTTGAACTACACGCTCCTCAGTCAGTTTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGCTTCGTCCTCGTTGAACGAATCGTCATCCGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGCTGATCACAGGGTGGCCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTCGGTGAGAGCTCGATATCCGGGGAGTACTATGCGCCGACACCGTCGACTACGGTGGCTAATGAGACGGATGCGTTTGGTTGTACGCACGATGATGTGCTTAGGATGGGAGGCGATTCGAGAGCTCAGGCAGCCGAGATGGCCGCCGGTACGGGGGGATCTTGTGGTAAGAGCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCCTCAGAGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGACGATTCAACTTTAAGGAGGTCGATAAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTTGACAAAGTTCCTGATGGGTTTTATTTAATCCATGGAATGAATCCATATGTGTGGACTGTGTGCACCAGCCTGCCTGATAACGATCGTATGCCATCAATTGAATCTTTAAAGTCTGTTGATCCTAGCAACGATTCTTCAATTGAAGTTGTTCTGATTGACCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAGTCGGGTCCAAAACATTTCTTGCACCTCTCTAACCACAAAAGAGGTTGTAGACCAGCTTGCAAATCTTGTCTGTAGAATTTTGGGTGGCTCAGTTTCTGGAGAAGATGTGTTGGTGTCCATTTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTGTTCCTCTGGGTGGACTCTCTGTAGGACTCTGTCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTTGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGACTTGATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTAATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGCAGAGCCTGCCATTGATTTTAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTTAATGTTGTTTTCGATGAAGGTTCCTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCCTTGTATCTAAAGCAGTTTGATAGAAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACCGGTGATAATGATGAAAAGGAAATTTTACTGCGTGCAAAAACTTCTCAGCCTAACTCCCAAGACAGAGATTTCCAACAATTTAAACCGCGTGAGAACTCTCATATTGTTATGCAACCAACTGTCCTGGTTGAGGATCCACTTAAGTACATTCCTAGCCGTAGAAGTGTGCAGTCATTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACGTAAGGTTTGCACAAGGAGGTCAGCTAATGCCAAGTGCTCGGAGTAGAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGGTGAGCTTGTTTTGAAAGAAAGAATCGGAGCAGGTTCCTTTGGAACTGTACATCGTGCTGATTGGAATGGATCGGAAGTTGCTGTGAAGATTCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTGCGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTCACCGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGCATAAACATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGGACATTTCTTTCATCAAAATCCGCAGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGCGATGAGCCCTCAAATGAAAGATCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCCTGGAAACGCCCAACTTTTTCCAGCATAATGGAAATCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGCCGTGCAGATACGCTCTCGGTGCTCCTAGCCAAATCTTCCATTTTGTCATTACTAGTAGTTCCCTTTTTCAAGCTAAGATCTTGTACCGCACTTCTCTCGGGTTTTTGTGAAGGGATGGAGAAGTGCTGGCAAAGTTGGCCTGCCAAAACAATCCCACCGAGCTTATTCTCAGTTCGTGATCATCAAAATGTAGAGAGATTACAAGAATGTGGATCACTTCATTGTCCACAACCAAGGAAGCTTCAACCTTTTTGCTATGGCAGTTCAAACATTCAATCAATACTCATGAGTCTGATATTTCAGAGACCTTCAAAATCCCATTGGTCGGTGGAGTTAACTTCGTCCTTAAGCAAGGTCCGGTCCAAAGCGTCGCTTTCGAACCGGTCCATAAAAAACCGTACGGACAAAAGATCTATAAGTCCCGCGTTGAAACCTCCCCTGTTTCCTCTTTCCCTCAACCACAATAACGGCCTTTCGAAATACCGCAGCTTCCGCGAAATCGATCCGATAAACGAAGGTCGGTTCTTCTTTGCAATTACTTCCTCTCAATTTCACAGAGAATCCAAAGCCTCAACTTTTTGGCTCAATCTTAATGGGGTCCCTGCACGAGCAACGACGCAACTGTAG | 3357 | 46.05 | MCNVYGSQLLSPTIEFQKETRTGKAEEIEQSPILHRFDGGFPAPNGFQVIGILTISMEMPGRRLNYTLLSQFPDDQYSGGVAGASSSLNESSSGEGKNDRRKLERGLDWEAGADHRVAQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDAFGCTHDDVLRMGGDSRAQAAEMAAGTGGSCGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLNPFQDDSTLRRSISSAEAVSHRFWVNGCLSYFDKVPDGFYLIHGMNPYVWTVCTSLPDNDRMPSIESLKSVDPSNDSSIEVVLIDQRTDPNLKDLQSRVQNISCTSLTTKEVVDQLANLVCRILGGSVSGEDVLVSIWRECSDNLKETLGSVVVPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPAEPAIDFRSLAKQYFSDCQLLNVVFDEGSSEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDNDEKEILLRAKTSQPNSQDRDFQQFKPRENSHIVMQPTVLVEDPLKYIPSRRSVQSFLDMSQPRMDSTMDVRFAQGGQLMPSARSRTLPLGAEDLDIPWGELVLKERIGAGSFGTVHRADWNGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNERSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPTFSSIMEILKPMTKQAPPQQGRADTLSVLLAKSSILSLLVVPFFKLRSCTALLSGFCEGMEKCWQSWPAKTIPPSLFSVRDHQNVERLQECGSLHCPQPRKLQPFCYGSSNIQSILMSLIFQRPSKSHWSVELTSSLSKVRSKASLSNRSIKNRTDKRSISPALKPPLFPLSLNHNNGLSKYRSFREIDPINEGRFFFAITSSQFHRESKASTFWLNLNGVPARATTQL | 1118 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 43761839 | 43779600 | - | Lag0026962.1 | Lac10g2917 | 585448 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2917 | 1118 | Gene3D | Phosphorylase Kinase; domain 1 | 638 | 723 | - | - | |
Lac10g2917 | 1118 | Pfam | Protein tyrosine and serine/threonine kinase | 646 | 898 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | ProSitePatterns | Protein kinases ATP-binding region signature. | 651 | 672 | IPR017441 | GO:0005524(InterPro) | |
Lac10g2917 | 1118 | SMART | serkin_6 | 645 | 902 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | ProSiteProfiles | Protein kinase domain profile. | 645 | 902 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | PRINTS | Tyrosine kinase catalytic domain signature | 719 | 732 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | PRINTS | Tyrosine kinase catalytic domain signature | 759 | 777 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | PRINTS | Tyrosine kinase catalytic domain signature | 825 | 847 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | PRINTS | Tyrosine kinase catalytic domain signature | 806 | 816 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | PRINTS | Tyrosine kinase catalytic domain signature | 869 | 891 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 151 | 901 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac10g2917 | 1118 | FunFam | Serine/threonine-protein kinase CTR1 | 724 | 908 | - | - | |
Lac10g2917 | 1118 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 249 | 453 | - | - | |
Lac10g2917 | 1118 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 765 | 777 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2917 | 1118 | CDD | STKc_MAP3K-like | 651 | 898 | - | - | |
Lac10g2917 | 1118 | FunFam | Serine/threonine-protein kinase isoform 1 | 635 | 723 | - | - | |
Lac10g2917 | 1118 | MobiDBLite | consensus disorder prediction | 80 | 102 | - | - | |
Lac10g2917 | 1118 | SUPERFAMILY | Protein kinase-like (PK-like) | 628 | 898 | IPR011009 | - | |
Lac10g2917 | 1118 | Gene3D | Transferase(Phosphotransferase) domain 1 | 724 | 912 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2917 | Lac-Chr10:43761839 | Lac3g2146 | Lac-Chr3:26804401 | 1.70E-125 | dispersed | |
Lac2g0788 | Lac-Chr2:6100163 | Lac10g2917 | Lac-Chr10:43761839 | 1.30E-177 | transposed | |
Lac1g2241 | Lac-Chr1:43812254 | Lac10g2917 | Lac-Chr10:43761839 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85695 | PF07714 | PK_Tyr_Ser-Thr | 8.10E-70 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2917 | K14510 | - | csv:101208452 | 1564.28 |