Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2917 ATGTGTAATGTGTATGGTTCTCAGCTTCTCTCTCCGACAATCGAATTCCAGAAAGAGACGCGCACCGGAAAAGCTGAAGAAATCGAACAGAGCCCAATTCTTCATCGCTTCGATGGTGGATTTCCGGCTCCAAACGGATTCCAGGTGATCGGAATTCTCACTATCTCGATGGAAATGCCCGGCAGGAGGTTGAACTACACGCTCCTCAGTCAGTTTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGCTTCGTCCTCGTTGAACGAATCGTCATCCGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGCTGATCACAGGGTGGCCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTCGGTGAGAGCTCGATATCCGGGGAGTACTATGCGCCGACACCGTCGACTACGGTGGCTAATGAGACGGATGCGTTTGGTTGTACGCACGATGATGTGCTTAGGATGGGAGGCGATTCGAGAGCTCAGGCAGCCGAGATGGCCGCCGGTACGGGGGGATCTTGTGGTAAGAGCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCCTCAGAGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGACGATTCAACTTTAAGGAGGTCGATAAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTTGACAAAGTTCCTGATGGGTTTTATTTAATCCATGGAATGAATCCATATGTGTGGACTGTGTGCACCAGCCTGCCTGATAACGATCGTATGCCATCAATTGAATCTTTAAAGTCTGTTGATCCTAGCAACGATTCTTCAATTGAAGTTGTTCTGATTGACCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAGTCGGGTCCAAAACATTTCTTGCACCTCTCTAACCACAAAAGAGGTTGTAGACCAGCTTGCAAATCTTGTCTGTAGAATTTTGGGTGGCTCAGTTTCTGGAGAAGATGTGTTGGTGTCCATTTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTGTTCCTCTGGGTGGACTCTCTGTAGGACTCTGTCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTTGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTCGACTTGATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTAATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGCAGAGCCTGCCATTGATTTTAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTTAATGTTGTTTTCGATGAAGGTTCCTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCCTTGTATCTAAAGCAGTTTGATAGAAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACCGGTGATAATGATGAAAAGGAAATTTTACTGCGTGCAAAAACTTCTCAGCCTAACTCCCAAGACAGAGATTTCCAACAATTTAAACCGCGTGAGAACTCTCATATTGTTATGCAACCAACTGTCCTGGTTGAGGATCCACTTAAGTACATTCCTAGCCGTAGAAGTGTGCAGTCATTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACGTAAGGTTTGCACAAGGAGGTCAGCTAATGCCAAGTGCTCGGAGTAGAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGGTGAGCTTGTTTTGAAAGAAAGAATCGGAGCAGGTTCCTTTGGAACTGTACATCGTGCTGATTGGAATGGATCGGAAGTTGCTGTGAAGATTCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTGCGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTCACCGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGCATAAACATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGGACATTTCTTTCATCAAAATCCGCAGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGCGATGAGCCCTCAAATGAAAGATCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCCTGGAAACGCCCAACTTTTTCCAGCATAATGGAAATCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGCCGTGCAGATACGCTCTCGGTGCTCCTAGCCAAATCTTCCATTTTGTCATTACTAGTAGTTCCCTTTTTCAAGCTAAGATCTTGTACCGCACTTCTCTCGGGTTTTTGTGAAGGGATGGAGAAGTGCTGGCAAAGTTGGCCTGCCAAAACAATCCCACCGAGCTTATTCTCAGTTCGTGATCATCAAAATGTAGAGAGATTACAAGAATGTGGATCACTTCATTGTCCACAACCAAGGAAGCTTCAACCTTTTTGCTATGGCAGTTCAAACATTCAATCAATACTCATGAGTCTGATATTTCAGAGACCTTCAAAATCCCATTGGTCGGTGGAGTTAACTTCGTCCTTAAGCAAGGTCCGGTCCAAAGCGTCGCTTTCGAACCGGTCCATAAAAAACCGTACGGACAAAAGATCTATAAGTCCCGCGTTGAAACCTCCCCTGTTTCCTCTTTCCCTCAACCACAATAACGGCCTTTCGAAATACCGCAGCTTCCGCGAAATCGATCCGATAAACGAAGGTCGGTTCTTCTTTGCAATTACTTCCTCTCAATTTCACAGAGAATCCAAAGCCTCAACTTTTTGGCTCAATCTTAATGGGGTCCCTGCACGAGCAACGACGCAACTGTAG 3357 46.05 MCNVYGSQLLSPTIEFQKETRTGKAEEIEQSPILHRFDGGFPAPNGFQVIGILTISMEMPGRRLNYTLLSQFPDDQYSGGVAGASSSLNESSSGEGKNDRRKLERGLDWEAGADHRVAQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDAFGCTHDDVLRMGGDSRAQAAEMAAGTGGSCGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLNPFQDDSTLRRSISSAEAVSHRFWVNGCLSYFDKVPDGFYLIHGMNPYVWTVCTSLPDNDRMPSIESLKSVDPSNDSSIEVVLIDQRTDPNLKDLQSRVQNISCTSLTTKEVVDQLANLVCRILGGSVSGEDVLVSIWRECSDNLKETLGSVVVPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPAEPAIDFRSLAKQYFSDCQLLNVVFDEGSSEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDNDEKEILLRAKTSQPNSQDRDFQQFKPRENSHIVMQPTVLVEDPLKYIPSRRSVQSFLDMSQPRMDSTMDVRFAQGGQLMPSARSRTLPLGAEDLDIPWGELVLKERIGAGSFGTVHRADWNGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNERSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPTFSSIMEILKPMTKQAPPQQGRADTLSVLLAKSSILSLLVVPFFKLRSCTALLSGFCEGMEKCWQSWPAKTIPPSLFSVRDHQNVERLQECGSLHCPQPRKLQPFCYGSSNIQSILMSLIFQRPSKSHWSVELTSSLSKVRSKASLSNRSIKNRTDKRSISPALKPPLFPLSLNHNNGLSKYRSFREIDPINEGRFFFAITSSQFHRESKASTFWLNLNGVPARATTQL 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43761839 43779600 - Lag0026962.1 Lac10g2917 585448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2917 1118 Gene3D Phosphorylase Kinase; domain 1 638 723 - -
Lac10g2917 1118 Pfam Protein tyrosine and serine/threonine kinase 646 898 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 ProSitePatterns Protein kinases ATP-binding region signature. 651 672 IPR017441 GO:0005524(InterPro)
Lac10g2917 1118 SMART serkin_6 645 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 ProSiteProfiles Protein kinase domain profile. 645 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 PRINTS Tyrosine kinase catalytic domain signature 719 732 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 PRINTS Tyrosine kinase catalytic domain signature 759 777 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 PRINTS Tyrosine kinase catalytic domain signature 825 847 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 PRINTS Tyrosine kinase catalytic domain signature 806 816 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 PRINTS Tyrosine kinase catalytic domain signature 869 891 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 PANTHER SERINE-THREONINE PROTEIN KINASE 151 901 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac10g2917 1118 FunFam Serine/threonine-protein kinase CTR1 724 908 - -
Lac10g2917 1118 Pfam Ethylene-responsive protein kinase Le-CTR1 249 453 - -
Lac10g2917 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2917 1118 CDD STKc_MAP3K-like 651 898 - -
Lac10g2917 1118 FunFam Serine/threonine-protein kinase isoform 1 635 723 - -
Lac10g2917 1118 MobiDBLite consensus disorder prediction 80 102 - -
Lac10g2917 1118 SUPERFAMILY Protein kinase-like (PK-like) 628 898 IPR011009 -
Lac10g2917 1118 Gene3D Transferase(Phosphotransferase) domain 1 724 912 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2917 Lac-Chr10:43761839 Lac3g2146 Lac-Chr3:26804401 1.70E-125 dispersed
Lac2g0788 Lac-Chr2:6100163 Lac10g2917 Lac-Chr10:43761839 1.30E-177 transposed
Lac1g2241 Lac-Chr1:43812254 Lac10g2917 Lac-Chr10:43761839 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85695 PF07714 PK_Tyr_Ser-Thr 8.10E-70 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2917 K14510 - csv:101208452 1564.28