Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2920 ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGTCCTGGTGAGGAGAAGATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTTGGCAATCAAAAGCTTGTTCTGGGATCATTATCCTCAGAAAAATTCCCACAAGTGGCTTTTGATCTGGTGTTTGACAAAGATTTTGAGCTATCTCATAATTGGAAAAATGGAAATACTGATTCTGAAGAAGATTTTCCAGTAGCTGCCATTGACAATGGAAAGCCAGAGCCACAGCCTAAGAAAGATGAAAAGCCTGATACTTCTGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGGTGGCCCTATTATTGACAGTAAGAAGAATGAAGATAGTTCTGATGAAGATGATGACGAGGATGAAGAGAGCATGGATGATGAGAATGCTAATGGAGGTGAAGAAGATGACAGTGATGATGATGAAAATGAGTTATCTGGGGACGACAGTGATGATGATGAAAATGAGGACTCAGATGACAGTTTGGAAGAGGATGAGCAGACACCAAAGAAGGCCGAAGCAAGCAAGAAGAGACCTTTAGAGTCTGCTAATAAAACACCTGCTCCTGATAAGAAGGCAAAACTCGTCACTCCTCAGAAAACTGATGGCAAGAAAGGCGTTCCTCATGTAGCTACTCCGCATCCTTCAAAGCAGGCCGGGAAAGCACCTGCTGCTAATGACCAAAATAAACAGCAGACTCCCAAATCAGCTGGGGGCACATTCCCTTGCAAATCTTGCAAGAGGGCATTTGGTTCAGAAACTGCGTTACAATCCCACACAAAAGCTAAGCACAGTGCTGAGAAGTGA 894 43.62 MEFWGAEVKVGEPLLVSPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGSLSSEKFPQVAFDLVFDKDFELSHNWKNGNTDSEEDFPVAAIDNGKPEPQPKKDEKPDTSGTKKKVQIVEPNKGGPIIDSKKNEDSSDEDDDEDEESMDDENANGGEEDDSDDDENELSGDDSDDDENEDSDDSLEEDEQTPKKAEASKKRPLESANKTPAPDKKAKLVTPQKTDGKKGVPHVATPHPSKQAGKAPAANDQNKQQTPKSAGGTFPCKSCKRAFGSETALQSHTKAKHSAEK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43821073 43824713 + Lag0026965.1 Lac10g2920 585451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2920 297 MobiDBLite consensus disorder prediction 83 275 - -
Lac10g2920 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 297 IPR013087 -
Lac10g2920 297 MobiDBLite consensus disorder prediction 193 217 - -
Lac10g2920 297 MobiDBLite consensus disorder prediction 251 268 - -
Lac10g2920 297 Gene3D Classic Zinc Finger 268 296 - -
Lac10g2920 297 Pfam Nucleoplasmin-like domain 3 84 IPR041232 -
Lac10g2920 297 Gene3D Nucleoplasmin core domain 1 88 - -
Lac10g2920 297 MobiDBLite consensus disorder prediction 141 192 - -
Lac10g2920 297 FunFam Histone deacetylase HDT1 1 88 - -
Lac10g2920 297 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Lac10g2920 297 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2920 Lac-Chr10:43821073 Lac9g2669 Lac-Chr9:45048199 7.00E-26 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22839 PF17800 NPL 1.80E-10 CL0055 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2920 - - - 0.0