Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2928 ATGATGATGATGACGACGATCATGGTGAAGATTTTCAGTTCCGCCATAGCTTTTCTTCTCTCCATTGCCCTTTTGGGTTACCCTTCTCTCTGTTTAGATGATACTTCTGCGCTGACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCAGCCTTCTCAGAAACTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGTGGAGTTCAGTGCTCTGTTAATGGCCGAGTTGTCGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTGGCGCCGCTCGATCAACTCCGCCTTCTCGACCTCCATGACAACCGCTTGAACGGTTCCATTTCGCCGGTTGTGAACTGTTCGAATCTCAAGTTGTTGTATCTCTCTGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTTCTCCGGATGGACTTGTCCGATAACAACATCCGCGGCGGAATTCCTGAGGATCTCACGAAATTGTCTCGGCTTCTCACGCTCCGTTTGCAGAACAATGTCCTCTCCGGTACGATTCCCGATCTCTCTGTTTCGCTTGTGAATCTCACTGAACTGAACTTAACCAACAATGAACTGTACGGCCGGTTGCCGGACGGGATGGTGAAGAAATTCGGCGAGAAGAGTTTCGCCGGTAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTAGTTCACCGCCGGCGTCGGATGCCGGCAGAACGGTACCTTCGAATCCAAGCTCATTGCCTCAAAACCCTATTATCAGTCCGAACGTTAAAGAATCAAGAAAAGGGCTCAGTCCTGGCGCGATTGCCGCGATTGTGATCGCAAATTGCGTTGCGTTGCTCGTGATTATCTCGTTCATCGTCGCGTATTACTGCGCTCGTGATCAGAGCTCGAGCTCCATGGCCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAGGTCTACGCCAATGGCGGTGGCGACAGCGATGGCACTAACGCTACAGATAGAAGCAAACTGGTGTTCTTCGACTGGAAGAAGCAATTCGAGCTTGAAGATTTGCTCAGAGCCTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACAGGGCGGTGCTCGACGACGGTTGTACGGTGGCGGTGAAGCGATTGAAGGATGCAAATCCATGCCCGAGGAAGGATTTTGAACAGTACATGGATGTGATTGGGAAGCTGAAGCATCCAAACATTGTCAGATTGAGAGCTTTTTACTACGCCAAAGAAGAAAAGCTTCTGGTTTACGATTATCTTCCTAATGGAAGCTTGCATTCTCTTCTCCATGGTAATCGAGGTCCAGGGAGGATTCCATTGGATTGGACAACAAGAATCAGCTTGGTTTTGGGAGCTGCTCGTGGATTAGCAAGGATCCATGGAGAATACAGTGCTTCAAAGATTCCTCATGGGAATGTCAAGTCTTCTAATGTTCTTCTTGACAAGAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTGCTTCTCAACCCTGTCCACGCCATTGCTAGGTTGGGAGGCTACAAGGCCCCGGAGCAAGACGAGACGAAACGGCTCTCTCAGAAGGCAGATGTTTATAGCTTTGGAGTCTTGTTGCTTGAAGTCTTGACCGGACGTGCACCATCGCTCTACCCGTCGCCTTCGCACCCGCGAAACGACGAGGAAGAGCAGTCGGTGGACCTCCCGAAATGGGTTCGGTCCGTGGTGAAGGAAGAGTGGACGGCCGAGGTGTTTGATCCCGAGCTGTTGAGGTACAAGAACATCGAGGAGGAGCTTGTGTCGATGCTTCACGTTGGGTTGGCTTGTGTTCTTCCTCAGCCGGAGAAGAGACCGACGATGGCGGAAGTGGCGAAGATGATCGAAGACATCAGGGTCGAGCAGTCTCCGCTCGGAGAAGATTACGACGAATCGCGTAATTCGCTTTCGCCTTCCCTTGCAACCACAGAAGATGGTATGGTGTAG 2037 51.35 MMMMTTIMVKIFSSAIAFLLSIALLGYPSLCLDDTSALTRFRLQADSHGSLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRLLDLHDNRLNGSISPVVNCSNLKLLYLSGNDFSGEIPPEISSLRRLLRMDLSDNNIRGGIPEDLTKLSRLLTLRLQNNVLSGTIPDLSVSLVNLTELNLTNNELYGRLPDGMVKKFGEKSFAGNEGVCGSSPLPICSVTSSPPASDAGRTVPSNPSSLPQNPIISPNVKESRKGLSPGAIAAIVIANCVALLVIISFIVAYYCARDQSSSSMAGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSHPRNDEEEQSVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMV 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43890450 43892596 + Lag0026973.1 Lac10g2928 585459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2928 678 ProSiteProfiles Protein kinase domain profile. 368 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2928 678 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 444 657 - -
Lac10g2928 678 MobiDBLite consensus disorder prediction 239 269 - -
Lac10g2928 678 FunFam pollen receptor-like kinase 1 339 443 - -
Lac10g2928 678 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515(InterPro)
Lac10g2928 678 Pfam Leucine Rich Repeat 193 211 IPR001611 GO:0005515(InterPro)
Lac10g2928 678 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Lac10g2928 678 Gene3D Ribonuclease Inhibitor 118 237 IPR032675 -
Lac10g2928 678 MobiDBLite consensus disorder prediction 309 342 - -
Lac10g2928 678 CDD STKc_IRAK 374 648 - -
Lac10g2928 678 Gene3D Ribonuclease Inhibitor 31 117 IPR032675 -
Lac10g2928 678 PANTHER OS05G0588300 PROTEIN 19 654 IPR050994 -
Lac10g2928 678 MobiDBLite consensus disorder prediction 239 267 - -
Lac10g2928 678 SUPERFAMILY L domain-like 32 212 - -
Lac10g2928 678 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lac10g2928 678 Gene3D Transferase(Phosphotransferase) domain 1 444 666 - -
Lac10g2928 678 MobiDBLite consensus disorder prediction 654 678 - -
Lac10g2928 678 Gene3D Phosphorylase Kinase; domain 1 341 443 - -
Lac10g2928 678 FunFam Nuclear pore complex protein NUP107 32 186 - -
Lac10g2928 678 SUPERFAMILY Protein kinase-like (PK-like) 372 645 IPR011009 -
Lac10g2928 678 Pfam Protein kinase domain 372 643 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2928 Lac-Chr10:43890450 Lac13g0520 Lac-Chr13:3812849 6.10E-110 dispersed
Lac3g0690 Lac-Chr3:5335786 Lac10g2928 Lac-Chr10:43890450 8.30E-20 dispersed
Lac10g2928 Lac-Chr10:43890450 Lac6g2971 Lac-Chr6:47280640 5.70E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85696 PF00069 Pkinase 1.20E-33 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2928 - - - 0.0