Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2933 ATGGTTCTCAAGACTGAGCTCTGTCGATTCAGTGGTGCCAAGATATATCCAGGGAAAGGTATCAGATTCGTGCGGGCTGATTCTCAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCGTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCTACCAAGAAGCCCTACTCTCGATCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATTAAGGAAAGGATTAAGAAGACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAACGTTCCTAAGGGAGCTGTACCCAAGGGTCCAAAGCTCGGTGGTGGCGGTGGAAAGCGTTGA 495 49.29 MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43947252 43949413 - Lag0026978.1 Lac10g2933 585464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2933 164 MobiDBLite consensus disorder prediction 118 164 - -
Lac10g2933 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Lac10g2933 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 158 IPR000988 GO:0002181(PANTHER)|GO:0003729(PANTHER)|GO:0003735(PANTHER)|GO:0022625(PANTHER)
Lac10g2933 164 SMART 4TRASH 8 46 IPR011017 -
Lac10g2933 164 Pfam Ribosomal protein L24e 3 67 IPR000988 -
Lac10g2933 164 FunFam 60S ribosomal protein L24 3 64 - -
Lac10g2933 164 Coils Coil 112 136 - -
Lac10g2933 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Lac10g2933 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Lac10g2933 164 Gene3D - 69 138 - -
Lac10g2933 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Lac10g2933 164 MobiDBLite consensus disorder prediction 118 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2228 Lac-Chr1:43673352 Lac10g2933 Lac-Chr10:43947252 2.20E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2933 K02896 - csv:101206122 244.202