Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g2937 | ATGTGTAAATTCCTAATTTTGTTTTTTGAGAATCCTCCTGTTGTTTCAGCTGCTGGTATATATTTCTGCAATGTAGCTGAGGCTGTTAGCACAAGTAGAAGGGCTCTAAGAGGAGCAAAAATACCTGAAAGTGAGTTTACAACACTCCCAAATGGTCTGAAGTACTATGATTTGAAGGTTGGAGGAGGAACTAAGGCTGTGATTGGATCCCGTGTTGCAGTTCACTATGTGGCCAAATGGAGAGGGATCACATTTATGACAAGTAGACAAGGGCTTGGTGTTGGTGGAGGAACGCCTTATGGATTTGATGTAGGCCAATCAGAAAGAGGAACAGTCCTCAAGGGATTGGATCTAGGTGTTCAAGGCATGAGGGTTGGAGGCCAGAGATTGCTTATAGTTCCTCCTGAGTTAGCTTATGGAAGCAAAGGGGTTCAGGAAATTCCTCCAAATGCAACAATTGAGTTGGATGTGGAATTGCTATCCATCAAACAAAGTCCATTTGGCTTGCCTTATGGGGAGAATGCATCTAGAAATATCTCCTTTATTGTGACCATTCAAGAGGAATCCACCACCCCGTCCTCTATTTACGCCACCATCGACCCAATCTGTAACATAAACCAGTTCTTCCTCATTGGCCCTTTGTACATGGTAGCTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCCTTGCTGCTATTCACAGAAAACCTGCCCAAGCTGTGGCCCCATTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATACTCTCCGCTGTGATTCTCATTCACAGAAACTCTACTTTGATGCACTCAATGGAAGCTCATATTCCGTCCTCAAAATCAACGCTTCGAGTCAACGTATGGTGATCCAACCATCTCCATGGGTTCCTGGCTCCTGTGTTACTCAAGACATGTTGGTCAGTGAAGGACTGTGGTTAAACCAATCACTCCCGTTTAACATCACTTCATCAAATACAATTTTCCTCTTGAACTGTTCTCCTCGCCTGCTAGTCTCGCCGCTCAATTGCACCCCTTCAAGTCTCTGTCACCACTACTTGGAAAGTTCAGGACGAGTTGATGGAAAAAGAGCATTTCAATGTGCAAGTGTCGTTGACCCTTGTTGTACCTTCATCCCTGGTGGGATGCCCTCAGCATATAAGATAAGGCTTCATAACTCAGGTTGTAGAGCATTCAGGAGCATCCTTCATCTAGATGTAGAAAAGCCTGCAAATCAATGGGAAGAAGGTTTAGAAATACAGTGGGCTACTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCGCTGGAGCGTCAGATTGTCTTCCTACTGATGGTTCCAAAAGTCGTTTTCGCTGTCTTTGCAGAAGGGGCTACTATTGGGATCATATTCTCGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTGGACTCAGTATAAAGCTCTCTGTATGTCTGGTTTCTCTTTTCATTCTAGCTGCGGTTATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAGCAGGAAAAGCTGTGTAAAGAAAGAGAAGATATGTTGAATTCAAGCAATGGTGGTAGACCAGCCAGGATGTTTCATTTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGGGTCCTAGGCAGCGGTGGCTTTGGAGAGGTTTACAAAGGTGAGCTTCAAGACGGGACCGTTGTGGCTGTGAAGTCGGCTAAAGTGGGCAATCTAAAGAGCACCGAGCAAATACTCAACGAAGTTGGAATACTATCTCAAGTAAATCACAAGAATCTTGTGAAACTTATAGGTTGCTGTGTGGAAACTGAACAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGTTTCCCACTTTCTTGGACTGGAGAAAAAGGCTAAAAGTTGCTTCACAAACTGCTGAAGCATTAGCTTACCTGCATTCAGCTGCATACCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATACTCTTGGATGATAACTTCAATGCCAAAGTTGCAGATTTTGGACTTTCCAGATTGGCTTTGCCAGGAATAAGCCATGTTTCCACTTGTGCTCAGGGTACATTAGGTTACTTAGACCCAGAATACTATCGAAATTACCAATTAACAGATAAAAGCGATGTGTATAGTTTTGGAGTCGTCCTACTTGAACTTATAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAGACGGTGTCAATCTAGCAATCTATGTGATCCAACAAGTGCACAATGGTGCAATCATCGACGCCATCGATAAACAGCTTCTCAGCGACGATCCATCCAGCAATATACTGATCAGTGTGAAGCACCTCTTGGAGCTCGCACTCGCCTGCTTGAGGGAGAAGAAAGCGGAAAGGCCTTGCATGAAGGATGTACTCCAAGAACTTGAATACATAACACAGATATTGGACAATCCAGAAACAGTTGCTGAAGAAGGTCAATCTTAA | 2562 | 43.29 | MCKFLILFFENPPVVSAAGIYFCNVAEAVSTSRRALRGAKIPESEFTTLPNGLKYYDLKVGGGTKAVIGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGTVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGVQEIPPNATIELDVELLSIKQSPFGLPYGENASRNISFIVTIQEESTTPSSIYATIDPICNINQFFLIGPLYMVAMKIPTPCLFGSYLFFLLFFSPCCYSQKTCPSCGPIEVPYPLSTNPNCGDLDYTLRCDSHSQKLYFDALNGSSYSVLKINASSQRMVIQPSPWVPGSCVTQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLESSGRVDGKRAFQCASVVDPCCTFIPGGMPSAYKIRLHNSGCRAFRSILHLDVEKPANQWEEGLEIQWATPPEPICRTQSDCAGASDCLPTDGSKSRFRCLCRRGYYWDHILGTCLRTNRKSMVGLSIKLSVCLVSLFILAAVIALITVRKSRTFSKQEKLCKEREDMLNSSNGGRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTVVAVKSAKVGNLKSTEQILNEVGILSQVNHKNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKFPTFLDWRKRLKVASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVADFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELITSQKAIDFTRDEDGVNLAIYVIQQVHNGAIIDAIDKQLLSDDPSSNILISVKHLLELALACLREKKAERPCMKDVLQELEYITQILDNPETVAEEGQS | 853 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 43980454 | 43985560 | + | Lag0026982.1 | Lac10g2937 | 585468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g2937 | 853 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 681 | 693 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2937 | 853 | Pfam | Protein tyrosine and serine/threonine kinase | 563 | 834 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g2937 | 853 | Gene3D | Transferase(Phosphotransferase) domain 1 | 637 | 849 | - | - | |
Lac10g2937 | 853 | SUPERFAMILY | FKBP-like | 39 | 163 | - | - | |
Lac10g2937 | 853 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 69 | 163 | IPR001179 | GO:0003755(InterPro) | |
Lac10g2937 | 853 | CDD | STKc_IRAK | 567 | 835 | - | - | |
Lac10g2937 | 853 | Gene3D | - | 26 | 166 | IPR046357 | GO:0003755(InterPro) | |
Lac10g2937 | 853 | ProSiteProfiles | Protein kinase domain profile. | 561 | 837 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2937 | 853 | FunFam | Wall-associated receptor kinase-like 20 | 637 | 847 | - | - | |
Lac10g2937 | 853 | SUPERFAMILY | Protein kinase-like (PK-like) | 537 | 838 | IPR011009 | - | |
Lac10g2937 | 853 | Gene3D | Phosphorylase Kinase; domain 1 | 532 | 636 | - | - | |
Lac10g2937 | 853 | Pfam | Wall-associated receptor kinase galacturonan-binding | 247 | 305 | IPR025287 | GO:0030247(InterPro) | |
Lac10g2937 | 853 | FunFam | Wall-associated receptor kinase-like 20 | 523 | 636 | - | - | |
Lac10g2937 | 853 | SMART | serkin_6 | 561 | 837 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g2937 | 853 | ProSitePatterns | Protein kinases ATP-binding region signature. | 567 | 589 | IPR017441 | GO:0005524(InterPro) | |
Lac10g2937 | 853 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 236 | 838 | IPR044652 | GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER) | |
Lac10g2937 | 853 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 64 | 160 | IPR001179 | GO:0003755(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0284 | Lac-Chr10:2158425 | Lac10g2937 | Lac-Chr10:43980454 | 3.10E-11 | dispersed | |
Lac10g2937 | Lac-Chr10:43980454 | Lac1g1985 | Lac-Chr1:41423375 | 2.80E-152 | dispersed | |
Lac2g0064 | Lac-Chr2:463126 | Lac10g2937 | Lac-Chr10:43980454 | 9.30E-23 | dispersed | |
Lac7g0088 | Lac-Chr7:742511 | Lac10g2937 | Lac-Chr10:43980454 | 1.50E-06 | dispersed | |
Lac9g2430 | Lac-Chr9:43321160 | Lac10g2937 | Lac-Chr10:43980454 | 3.10E-57 | dispersed | |
Lac10g2937 | Lac-Chr10:43980454 | Lac8g2932 | Lac-Chr8:46347207 | 1.70E-170 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85697 | PF07714 | PK_Tyr_Ser-Thr | 3.00E-48 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g2937 | - | - | - | 0.0 |