Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2937 ATGTGTAAATTCCTAATTTTGTTTTTTGAGAATCCTCCTGTTGTTTCAGCTGCTGGTATATATTTCTGCAATGTAGCTGAGGCTGTTAGCACAAGTAGAAGGGCTCTAAGAGGAGCAAAAATACCTGAAAGTGAGTTTACAACACTCCCAAATGGTCTGAAGTACTATGATTTGAAGGTTGGAGGAGGAACTAAGGCTGTGATTGGATCCCGTGTTGCAGTTCACTATGTGGCCAAATGGAGAGGGATCACATTTATGACAAGTAGACAAGGGCTTGGTGTTGGTGGAGGAACGCCTTATGGATTTGATGTAGGCCAATCAGAAAGAGGAACAGTCCTCAAGGGATTGGATCTAGGTGTTCAAGGCATGAGGGTTGGAGGCCAGAGATTGCTTATAGTTCCTCCTGAGTTAGCTTATGGAAGCAAAGGGGTTCAGGAAATTCCTCCAAATGCAACAATTGAGTTGGATGTGGAATTGCTATCCATCAAACAAAGTCCATTTGGCTTGCCTTATGGGGAGAATGCATCTAGAAATATCTCCTTTATTGTGACCATTCAAGAGGAATCCACCACCCCGTCCTCTATTTACGCCACCATCGACCCAATCTGTAACATAAACCAGTTCTTCCTCATTGGCCCTTTGTACATGGTAGCTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCCTTGCTGCTATTCACAGAAAACCTGCCCAAGCTGTGGCCCCATTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATACTCTCCGCTGTGATTCTCATTCACAGAAACTCTACTTTGATGCACTCAATGGAAGCTCATATTCCGTCCTCAAAATCAACGCTTCGAGTCAACGTATGGTGATCCAACCATCTCCATGGGTTCCTGGCTCCTGTGTTACTCAAGACATGTTGGTCAGTGAAGGACTGTGGTTAAACCAATCACTCCCGTTTAACATCACTTCATCAAATACAATTTTCCTCTTGAACTGTTCTCCTCGCCTGCTAGTCTCGCCGCTCAATTGCACCCCTTCAAGTCTCTGTCACCACTACTTGGAAAGTTCAGGACGAGTTGATGGAAAAAGAGCATTTCAATGTGCAAGTGTCGTTGACCCTTGTTGTACCTTCATCCCTGGTGGGATGCCCTCAGCATATAAGATAAGGCTTCATAACTCAGGTTGTAGAGCATTCAGGAGCATCCTTCATCTAGATGTAGAAAAGCCTGCAAATCAATGGGAAGAAGGTTTAGAAATACAGTGGGCTACTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCGCTGGAGCGTCAGATTGTCTTCCTACTGATGGTTCCAAAAGTCGTTTTCGCTGTCTTTGCAGAAGGGGCTACTATTGGGATCATATTCTCGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTGGACTCAGTATAAAGCTCTCTGTATGTCTGGTTTCTCTTTTCATTCTAGCTGCGGTTATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAGCAGGAAAAGCTGTGTAAAGAAAGAGAAGATATGTTGAATTCAAGCAATGGTGGTAGACCAGCCAGGATGTTTCATTTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGGGTCCTAGGCAGCGGTGGCTTTGGAGAGGTTTACAAAGGTGAGCTTCAAGACGGGACCGTTGTGGCTGTGAAGTCGGCTAAAGTGGGCAATCTAAAGAGCACCGAGCAAATACTCAACGAAGTTGGAATACTATCTCAAGTAAATCACAAGAATCTTGTGAAACTTATAGGTTGCTGTGTGGAAACTGAACAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGTTTCCCACTTTCTTGGACTGGAGAAAAAGGCTAAAAGTTGCTTCACAAACTGCTGAAGCATTAGCTTACCTGCATTCAGCTGCATACCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATACTCTTGGATGATAACTTCAATGCCAAAGTTGCAGATTTTGGACTTTCCAGATTGGCTTTGCCAGGAATAAGCCATGTTTCCACTTGTGCTCAGGGTACATTAGGTTACTTAGACCCAGAATACTATCGAAATTACCAATTAACAGATAAAAGCGATGTGTATAGTTTTGGAGTCGTCCTACTTGAACTTATAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAGACGGTGTCAATCTAGCAATCTATGTGATCCAACAAGTGCACAATGGTGCAATCATCGACGCCATCGATAAACAGCTTCTCAGCGACGATCCATCCAGCAATATACTGATCAGTGTGAAGCACCTCTTGGAGCTCGCACTCGCCTGCTTGAGGGAGAAGAAAGCGGAAAGGCCTTGCATGAAGGATGTACTCCAAGAACTTGAATACATAACACAGATATTGGACAATCCAGAAACAGTTGCTGAAGAAGGTCAATCTTAA 2562 43.29 MCKFLILFFENPPVVSAAGIYFCNVAEAVSTSRRALRGAKIPESEFTTLPNGLKYYDLKVGGGTKAVIGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGTVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGVQEIPPNATIELDVELLSIKQSPFGLPYGENASRNISFIVTIQEESTTPSSIYATIDPICNINQFFLIGPLYMVAMKIPTPCLFGSYLFFLLFFSPCCYSQKTCPSCGPIEVPYPLSTNPNCGDLDYTLRCDSHSQKLYFDALNGSSYSVLKINASSQRMVIQPSPWVPGSCVTQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLESSGRVDGKRAFQCASVVDPCCTFIPGGMPSAYKIRLHNSGCRAFRSILHLDVEKPANQWEEGLEIQWATPPEPICRTQSDCAGASDCLPTDGSKSRFRCLCRRGYYWDHILGTCLRTNRKSMVGLSIKLSVCLVSLFILAAVIALITVRKSRTFSKQEKLCKEREDMLNSSNGGRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTVVAVKSAKVGNLKSTEQILNEVGILSQVNHKNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKFPTFLDWRKRLKVASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVADFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELITSQKAIDFTRDEDGVNLAIYVIQQVHNGAIIDAIDKQLLSDDPSSNILISVKHLLELALACLREKKAERPCMKDVLQELEYITQILDNPETVAEEGQS 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43980454 43985560 + Lag0026982.1 Lac10g2937 585468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2937 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 681 693 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2937 853 Pfam Protein tyrosine and serine/threonine kinase 563 834 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g2937 853 Gene3D Transferase(Phosphotransferase) domain 1 637 849 - -
Lac10g2937 853 SUPERFAMILY FKBP-like 39 163 - -
Lac10g2937 853 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 163 IPR001179 GO:0003755(InterPro)
Lac10g2937 853 CDD STKc_IRAK 567 835 - -
Lac10g2937 853 Gene3D - 26 166 IPR046357 GO:0003755(InterPro)
Lac10g2937 853 ProSiteProfiles Protein kinase domain profile. 561 837 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2937 853 FunFam Wall-associated receptor kinase-like 20 637 847 - -
Lac10g2937 853 SUPERFAMILY Protein kinase-like (PK-like) 537 838 IPR011009 -
Lac10g2937 853 Gene3D Phosphorylase Kinase; domain 1 532 636 - -
Lac10g2937 853 Pfam Wall-associated receptor kinase galacturonan-binding 247 305 IPR025287 GO:0030247(InterPro)
Lac10g2937 853 FunFam Wall-associated receptor kinase-like 20 523 636 - -
Lac10g2937 853 SMART serkin_6 561 837 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g2937 853 ProSitePatterns Protein kinases ATP-binding region signature. 567 589 IPR017441 GO:0005524(InterPro)
Lac10g2937 853 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 236 838 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac10g2937 853 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 64 160 IPR001179 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0284 Lac-Chr10:2158425 Lac10g2937 Lac-Chr10:43980454 3.10E-11 dispersed
Lac10g2937 Lac-Chr10:43980454 Lac1g1985 Lac-Chr1:41423375 2.80E-152 dispersed
Lac2g0064 Lac-Chr2:463126 Lac10g2937 Lac-Chr10:43980454 9.30E-23 dispersed
Lac7g0088 Lac-Chr7:742511 Lac10g2937 Lac-Chr10:43980454 1.50E-06 dispersed
Lac9g2430 Lac-Chr9:43321160 Lac10g2937 Lac-Chr10:43980454 3.10E-57 dispersed
Lac10g2937 Lac-Chr10:43980454 Lac8g2932 Lac-Chr8:46347207 1.70E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85697 PF07714 PK_Tyr_Ser-Thr 3.00E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2937 - - - 0.0