Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g2950 | ATGGTCGTCGGAAACGAAAAAACGCCGATGGAGAATGAGACCGCCACCACCGCCGCGGAGGGCGAGAGCCAGAACAGAGCGAGGCTGGCCATTCTAGAGCTCGCGAACATGATCAGCGTTCCGATGTCCCTCAACGCCGTCGTCCGCCTCAATATCGCCGATGCCATCTGGCAAGGAGGTTCCAACGAACCGCTCTCCGCCTCCGAGATCCTCGCACGCGTGATTCCAACCGGCGGCGACGCCGATAATCTCGAGCGCATCGTCCGTATGCTCACTAGCTACGGCGTTTTCAAAGAGCATCTCAGCCCTAACTCATCGGACCGCCGGTATTCCCTCACCGACGTCGGAAAGACTCTGGTTACTGATTCCGATGGCCTCTCCTACGCGCCCTACGTGCTTCAGCATCATCAGGACGCGCTTATGAGAGCGTGGCCTAGAGTGCACGAGGCTGCGATTGACGCTACGACGGAGCCGTTCGTTAAAGCGAACGGAGAAGCGGCGTACAGTTACTACGGGAAGAAGGCGGAGATGAACTTGTTGATGCAGAGAGCGATGGCCGGCGTATCGGCGCCGTTCATGAAGGCTGTATTGGACGGCTACGATGGCTTCGGAGGAGTGGAGAAATTGGTGGACGTCGGCGGCAGCGCCGGCGATTGCTTGAGGATGATTTTACAGAAACATCCTCACATTAAGGAAGGGATCAACTTCGATCTGCCGGAGGTGGTGGCTAGGGCTCCCAGCATCCCCGGGGTGACTCACGTTGGAGGCGACATGTTCAAGTCCATCCCCACCGGTGACGCCATTTTCATGAAGTGGGTTCTATCGACATGGACGGACGATGAATGCAAGATTATATTGGAGAACTGCTGCAAATCTCTGCCGGCGGGAGGGAAACTGATCGCCTGCGAGCCGACGCTGCCGGAGAAGACCGACGACAGTCACCGGACACGTGCCCTTTTGGCCAACGACATATTCATAATGACCATTTACAGGGCCAAAAGCAAGCAGAGGACTGAAGAGCAGTTCCGGCAGCTCGGCCTCTCCGCCGGCTTCTCCGCCCTCCGCCCATTCCATATCGATTACTTCTACTGTTTGTTGGAATTTCAAAAGTGA | 1113 | 56.78 | MVVGNEKTPMENETATTAAEGESQNRARLAILELANMISVPMSLNAVVRLNIADAIWQGGSNEPLSASEILARVIPTGGDADNLERIVRMLTSYGVFKEHLSPNSSDRRYSLTDVGKTLVTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDATTEPFVKANGEAAYSYYGKKAEMNLLMQRAMAGVSAPFMKAVLDGYDGFGGVEKLVDVGGSAGDCLRMILQKHPHIKEGINFDLPEVVARAPSIPGVTHVGGDMFKSIPTGDAIFMKWVLSTWTDDECKIILENCCKSLPAGGKLIACEPTLPEKTDDSHRTRALLANDIFIMTIYRAKSKQRTEEQFRQLGLSAGFSALRPFHIDYFYCLLEFQK | 370 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 44100123 | 44105707 | + | Lag0026995.1 | Lac10g2950 | 585481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g2950 | 370 | Gene3D | - | 12 | 124 | IPR036388 | - | |
| Lac10g2950 | 370 | SUPERFAMILY | Winged helix DNA-binding domain | 24 | 124 | IPR036390 | - | |
| Lac10g2950 | 370 | Pfam | O-methyltransferase domain | 149 | 352 | IPR001077 | GO:0008171(InterPro) | |
| Lac10g2950 | 370 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 124 | 368 | IPR029063 | - | |
| Lac10g2950 | 370 | PANTHER | O-METHYLTRANSFERASE | 35 | 351 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
| Lac10g2950 | 370 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Lac10g2950 | 370 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 32 | 370 | IPR016461 | GO:0008168(InterPro) | |
| Lac10g2950 | 370 | Gene3D | Vaccinia Virus protein VP39 | 125 | 370 | IPR029063 | - | |
| Lac10g2950 | 370 | PIRSF | O-mtase | 8 | 370 | IPR016461 | GO:0008168(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2950 | Lac-Chr10:44100123 | Lac5g3088 | Lac-Chr5:48558109 | 8.60E-58 | dispersed | |
| Lac10g2950 | Lac-Chr10:44100123 | Lac8g1483 | Lac-Chr8:32138720 | 2.00E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g2950 | - | - | - | 0.0 |