Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2954 ATGAGGAACAAAACCAACTTCTTCTTTTGGCTCTACACTCTTGTCATTGTAGTTCTTTTCATCACCATTGCCTTCCGCTCGTCCCCGCTTTCCTCGACCGACATCGTCGCCGTTGTCGGTCCTCAAGATGGTGCTTTTGAGCTTGGCATTTTCAGCAGTCTAGCCAAAGAAAGTGGTTTGGATGATCTCTTGTCTCTTGTGACTCAAATTGTGTCCAAACACCTTCATGGATGGAAGGATAGAAGAAGTTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTATTTACAATGTTTCACTTACTTTGACAGTTGATTTGAAAGGATGTGCAAATTTTAGTAGTGTGCAGAAGGCTGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATTTACAGGGAGAAGGTGGTGATAGAAGGAAACAAGACAAACTTGATAATTCAAGGTCAAGGTTATCTCAACACTGCAATAGAATGGAATGACACTGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTATCTATCTTTGCTTCAAACTTCACTGCTTTCAACATCAGCTTCAAAAACACAGCTCCTGAGCCAACTCCAGGGATTGTTGGAGGGCAAGCAGTGGCACTTCGAATTGCAGGAGATGAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAGGGAAGACATTACTTCAAAGATTGTTTCATTCAAGGATCCATTGATTTCATCTTTGGCAATGCTCGATCGCTCTACGATGGATGCAGCATCAAGTCAATAGCAAAGGAAGTATGGGGTACTGGTGGGGTAAGTGGAGCCATCACAGCTCAAGGAAGGCAAACAAGCAGCGAGGAAACTGGTTTTGCTTTCATCAACTGCACCATCCATGGCTCTGGCAAGGTGTGGCTCGGCCGCGCCTGGGGCGTCTCCGCCACCGTCGTCTTCTCCAACACATACATGACCGACGTCGTCGCGGACGACGGATGGAATGACTGGAGAGACCCTTCAAGAGATCAGAGTGTGTTCTTTGGGGAATATGAATGCTTTGGAAGTGGAGCAAATTACAGCTTGAGAGTGCCATATGCAAAGCAGCTCAATCAAGTGGAAGCTCAGCCTTACTTGGATGTTTCTTATGTTGATGGAAATCAATGGCTCATCTATCAACAAACATCTTTGTCGCTGCCGTTTAATTTAATTTAG 1242 44.85 MRNKTNFFFWLYTLVIVVLFITIAFRSSPLSSTDIVAVVGPQDGAFELGIFSSLAKESGLDDLLSLVTQIVSKHLHGWKDRRSCDEKKWNSELISIYNVSLTLTVDLKGCANFSSVQKAVDAVPDYGSSRTLILIDSGIYREKVVIEGNKTNLIIQGQGYLNTAIEWNDTANSTGGTTYSSSVSIFASNFTAFNISFKNTAPEPTPGIVGGQAVALRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKDCFIQGSIDFIFGNARSLYDGCSIKSIAKEVWGTGGVSGAITAQGRQTSSEETGFAFINCTIHGSGKVWLGRAWGVSATVVFSNTYMTDVVADDGWNDWRDPSRDQSVFFGEYECFGSGANYSLRVPYAKQLNQVEAQPYLDVSYVDGNQWLIYQQTSLSLPFNLI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44140940 44143706 + Lag0026999.1 Lac10g2954 585485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2954 413 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Lac10g2954 413 Pfam Pectinesterase 104 395 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac10g2954 413 FunFam Pectinesterase 97 404 - -
Lac10g2954 413 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 399 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lac10g2954 413 Gene3D - 96 407 IPR012334 -
Lac10g2954 413 SUPERFAMILY Pectin lyase-like 98 401 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2954 Lac-Chr10:44140940 Lac5g2314 Lac-Chr5:41792956 9.40E-106 dispersed
Lac10g2954 Lac-Chr10:44140940 Lac11g1717 Lac-Chr11:31201364 3.40E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2954 - - - 0.0