Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2984 ATGCCGTTCCAGAGGATAACCATCGCCGTCGGCCGCCCGGAGGAGGCCACCCACCCCGCCGCCCTCAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTCTTCGCCGGCCAAGGCTCCGGTCTCGCCTTCGCCAAGCTCACCCAGAACTCTCCCACCACCCCTGCCGGTCTCCTCATAGCCTCCATAGCTCATGGCTTTGCCCTTTTCGTCGGCGTCTCCACCGGAGCCAACATCTCCGGCGGCCACCTCAACCCCGCCGTCACTTTCGGCCTCCTCGTCGGCGGTAACATCACCCTCCTCCGCGGCGTCCTCTACTGGATCGCTCAGCTCCTCGGCGCCGTCGTCGCTAACTTGCTGCTCAAATTCGTCATCACCGACGTGGCAATCTCAGGATTCTCGTTGACAGCGGGAGTTGGAGTTTGGGAAGCATTCGTTTTCGAGATCGTAATGACATTCGGATTAGTCTACACGGTCTACGCCACCGCCGTCGACCCGAAGAAGGGAGAGTTGGGAGTGATTGCACCCATCGCCATCGGATTGATCGTGGCGGCGAACATTCTGGTGGGCGGCCCCTTCACCGGCGCCTCCATGAACCCCGCCGTGGCCTTCGGACCCGCCGTCGTTGCTTGGTCTTGGGCCGAGCACTGGATCTACTGGGCCGGCCCACTCATCGGCGGCGGCTTGGCCGGCGTCATCTACGAGCTCTTCTTCATTGGGTTCACCCACGAGCCCCTACCCGTCGCGGAATACTGA 762 62.34 MPFQRITIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFAKLTQNSPTTPAGLLIASIAHGFALFVGVSTGANISGGHLNPAVTFGLLVGGNITLLRGVLYWIAQLLGAVVANLLLKFVITDVAISGFSLTAGVGVWEAFVFEIVMTFGLVYTVYATAVDPKKGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPAVVAWSWAEHWIYWAGPLIGGGLAGVIYELFFIGFTHEPLPVAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44423477 44424335 + Lag0027029.1 Lac10g2984 585515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2984 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 FunFam Probable aquaporin TIP1-1 6 252 - -
Lac10g2984 253 Gene3D Glycerol uptake facilitator protein. 6 247 IPR023271 -
Lac10g2984 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Lac10g2984 253 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac10g2984 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Lac10g2984 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g2984 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2984 Lac-Chr10:44423477 Lac1g2185 Lac-Chr1:43310071 1.20E-103 dispersed
Lac10g2984 Lac-Chr10:44423477 Lac4g2901 Lac-Chr4:47447596 3.10E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2984 K09873 - csv:101222386 454.907