Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2997 ATGGCGATCGCGATGGCCAAATCTTTCGATCCCCAATCGCAGATTTACACTTCCCCTCGTCCCCCAATCCACTTTCCCGCCGACCCCTCCATCTCCCTTGCTTCATTCCTCTTCCGAAACTCCTCCTCTTTCCCTCACAGCCTCGCCCTCGCCGACGCCGATTCCGGCGAATCCCTCACCTTCCGTCAGCTTCAAATCCAAGTCTCCAAGTTAGCCCATGCCTTCATCCAACTTGGGATTCGAAAAGGCGATGTGGTTCTCTTATTCGCGCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACCTTCGCCGAACTGTCCAAGCAAGTCCAAAACTGCAACCCCAAGCTCGTAATCACCGTTCCTGAACTCTGGGACGTAATCGGTAAGCTCAACTTGCCTTCTGTAATTCTGGGTTCTGAGATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAGGCTGGCGATGTGTCCAATTTTCCGGTTCGTGAAGTGGGTCAGAGCGATGTAGCGGCTCTTTTGTATTCATCAGGGACGACTGGGGTCAGCAAGGGAGTGATTCTAACTCACAAGAACTTCATAACGACGGCGTTGATGGTTTCTCAGGATCAGGACCGTAGTGGTGATCCTAGAAACGTGTTTTTGTGCTTCCTTCCAATGTTCCATGTCTTTGGTCTCTCTATAGTTCTTTACGCGCAGCTTCAAAGAGGAAACACCGTCGTTTCAATGGCGAAGTTTGAGCTGGAAAAGGCTTTGAGGGTCGTGATGAAGTACAAGATCACTCATCTTTATCTTGTTCCGCCTGTAATTATAGCTCTGACGAAGCAAAGTGTAGTTAAGAATTACGATTTGTCTTCGTTGAAGGAGATCTTATCTGGGGCTGCGCCTCTTGGGAAGGAGGTGATGGAGGAATGCTCAAAGATTATACCTCAGGCCAAGATCAAGCAGGGATATGGTATGACAGAGACTTGTGGAGTTATTGCAGTGGAGTATGTGGAGGTAAGATCTAAGCTATCTGGGTCAACTGGAATCCTTATTTCAGGAGTTGAAGCTCAAATTTTGAGTACAGAAACACAGAAACGTCTTCCACCAGGTGAAACTGGGGAAATATGCGTCCGAGGACCAAATATGATGAAAGGGTATTTTAACAATCAGAAAGCCACCAACGACACCATTGATGATCAAGGATGGGTACATACTGGAGATATCGGATATTTCAATGAAGAAGGAGAGTTATTTGTTGTGGACAGAATCAAAGAACTCATCAAGTGTTATGGTTTTCAGGTTGCACCAGCGGAGCTTGAAGCACTGCTACTTTCTCACCCTCAAGTATTAGATGCCATTGTGATTCCATATCCCGATGATAAAGCCGGTGAGGTCCCTATTGCATTTGTTGTTCGTTCGCATAATAGTTCGATAAAGGAAGAAGATGTTGAAAAGTTTATTGCAGGACAGGTTGCACCATTCAAGAGATTAAAAAAAGTAACCTTCACAAGCAGTGTTCCGAAGTCGGCGTCGGGAAAACTTCTGAGAAGGGAGCTCATAGCACAAGTCCGTGCCAAAATGTAG 1638 46.28 MAIAMAKSFDPQSQIYTSPRPPIHFPADPSISLASFLFRNSSSFPHSLALADADSGESLTFRQLQIQVSKLAHAFIQLGIRKGDVVLLFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFAELSKQVQNCNPKLVITVPELWDVIGKLNLPSVILGSEISSKFSRPNIWGYSDLIKKAGDVSNFPVREVGQSDVAALLYSSGTTGVSKGVILTHKNFITTALMVSQDQDRSGDPRNVFLCFLPMFHVFGLSIVLYAQLQRGNTVVSMAKFELEKALRVVMKYKITHLYLVPPVIIALTKQSVVKNYDLSSLKEILSGAAPLGKEVMEECSKIIPQAKIKQGYGMTETCGVIAVEYVEVRSKLSGSTGILISGVEAQILSTETQKRLPPGETGEICVRGPNMMKGYFNNQKATNDTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQVLDAIVIPYPDDKAGEVPIAFVVRSHNSSIKEEDVEKFIAGQVAPFKRLKKVTFTSSVPKSASGKLLRRELIAQVRAKM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44550185 44555379 + Lag0027042.1 Lac10g2997 585528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2997 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Lac10g2997 545 CDD 4CL 25 537 - -
Lac10g2997 545 Gene3D - 14 442 IPR042099 -
Lac10g2997 545 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Lac10g2997 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 537 - GO:0016405(PANTHER)
Lac10g2997 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
Lac10g2997 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Lac10g2997 545 Gene3D - 443 544 IPR045851 -
Lac10g2997 545 Pfam AMP-binding enzyme 39 405 IPR000873 -
Lac10g2997 545 SUPERFAMILY Acetyl-CoA synthetase-like 16 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2997 Lac-Chr10:44550185 Lac7g2419 Lac-Chr7:41297922 2.80E-190 dispersed
Lac10g2997 Lac-Chr10:44550185 Lac11g0573 Lac-Chr11:5816331 1.70E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2997 K01904 - csv:101204417 943.34